diff squidpy_spatial.xml @ 4:11ea000ad53f draft default tip

planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/squidpy commit 389037ecb8da218c833d4e7ea8279215cc41d5bf
author goeckslab
date Tue, 02 Jul 2024 19:54:29 +0000
parents d30ef0613122
children
line wrap: on
line diff
--- a/squidpy_spatial.xml	Tue May 14 21:54:05 2024 +0000
+++ b/squidpy_spatial.xml	Tue Jul 02 19:54:29 2024 +0000
@@ -17,9 +17,8 @@
             --anndata '$anndata'
             --output '$output'
             #if $analyses.selected_tool in ['nhood_enrichment', 'centrality_scores', 'interaction_matrix', 'ligrec', 'ripley', 'co_occurrence']:
-            --output_plot "`pwd`/image.png"
+                 --output_plot image.png
             #end if
-
         ]]>
     </command>
     <configfiles>
@@ -246,7 +245,7 @@
     </inputs>
     <outputs>
         <data format="h5ad" name="output" label="Squidpy.gr.${analyses.selected_tool} on ${on_string}" />
-        <data from_work_dir="image.png" format="png" name="output_plot" label="Squidpy.pl.${analyses.selected_tool} on ${on_string}" >
+        <data from_work_dir="figures/image.png" format="png" name="output_plot" label="Squidpy.pl.${analyses.selected_tool} on ${on_string}" >
             <filter>analyses['selected_tool'] in ['nhood_enrichment', 'centrality_scores', 'interaction_matrix', 'ligrec', 'ripley', 'co_occurrence']</filter>
         </data>
     </outputs>