comparison squidpy_scatter.py @ 1:b84c324b58bd draft default tip

planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/squidpy commit ed118f79326f83eff1315f735b4e0e1a45a5e02c

0:6fe0d4f464f4

    # read inputs JSON
    with open(inputs, 'r') as param_handler:
        params = json.load(param_handler)

    # collapse param dict hierarchy, parse inputs
    plot_opts = params.pop('plot_opts')
    legend_opts = params.pop('legend_opts')
    aes_opts = params.pop('aesthetic_opts')
    options = {**params, **plot_opts, **legend_opts, **aes_opts}

    # read input anndata file
    adata_fh = options.pop('anndata')
    adata = read_h5ad(adata_fh)

1:b84c324b58bd

    # read inputs JSON
    with open(inputs, 'r') as param_handler:
        params = json.load(param_handler)

    # collapse param dict hierarchy, parse inputs
    main_params = ['anndata', 'x_coord', 'y_coord', 'color']
    plot_opts = params.pop('plot_opts')
    legend_opts = params.pop('legend_opts')
    aes_opts = params.pop('aesthetic_opts')
    options = {
        **{k: params[k] for k in main_params},
        **plot_opts,
        **legend_opts,
        **aes_opts
    }

    # read input anndata file
    adata_fh = options.pop('anndata')
    adata = read_h5ad(adata_fh)