comparison main_macros.xml @ 7:cab38f254824 draft default tip

planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/vitessce commit 52576a03742abfab8a623c06e22624f1d8423e3d

6:70c8be4d59e9

<macros>
    <token name="@TOOL_VERSION@">3.5.1</token>
    <token name="@VERSION_SUFFIX@">2</token>
    <token name="@PROFILE@">22.01</token>

    <xml name="vitessce_requirements">
        <requirements>
            <container type="docker">quay.io/goeckslab/vitessce:@TOOL_VERSION@</container>
        </requirements>

            #if $do_phenotyping.phenotyping_choice == 'add_h5ad'
            --anndata '$anndata'
            #end if
            &&
        cp '$__tool_directory__/index.html' '$output' &&
        sed -i 's|display?filename=/|display?filename=|g' ${output.files_path}/config.json &&
        echo "export var config = \$(cat ${output.files_path}/config.json)" >> '${output.files_path}/config.js' &&
        cat '${output.files_path}/config.json' >> '$vitessce_config';
        ]]>
        </command>
    </xml>

7:cab38f254824

<macros>
    <token name="@TOOL_VERSION@">3.5.1</token>
    <token name="@VERSION_SUFFIX@">3</token>
    <token name="@PROFILE@">25.0</token>

    <xml name="vitessce_requirements">
        <requirements>
            <container type="docker">quay.io/goeckslab/vitessce:@TOOL_VERSION@</container>
        </requirements>

            #if $do_phenotyping.phenotyping_choice == 'add_h5ad'
            --anndata '$anndata'
            #end if
            &&
        cp '$__tool_directory__/index.html' '$output' &&
        echo "export var config = \$(cat ${output.files_path}/config.json)" >> '${output.files_path}/config.js' &&
        cat '${output.files_path}/config.json' >> '$vitessce_config';
        ]]>
        </command>
    </xml>