Mercurial > repos > goeckslab > vitessce_spatial
changeset 2:4f43e11fb3c9 draft
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/vitessce commit a6714d257c45c11d999c7cc2241c89da193cae15
author | goeckslab |
---|---|
date | Fri, 10 May 2024 17:21:19 +0000 (7 months ago) |
parents | 4bf852448b5d |
children | 7cc457aa78b1 |
files | main_macros.xml |
diffstat | 1 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/main_macros.xml Wed Feb 28 20:52:55 2024 +0000 +++ b/main_macros.xml Fri May 10 17:21:19 2024 +0000 @@ -1,11 +1,11 @@ <macros> <token name="@TOOL_VERSION@">1.0.4</token> - <token name="@VERSION_SUFFIX@">3</token> + <token name="@VERSION_SUFFIX@">4</token> <token name="@PROFILE@">20.01</token> <xml name="vitessce_requirements"> <requirements> - <container type="docker">quay.io/goeckslab/vitessce:@TOOL_VERSION@</container> + <container type="docker">quay.io/goeckslab/vitessce:@TOOL_VERSION@v2</container> </requirements> </xml> @@ -18,7 +18,8 @@ <xml name="vitessce_cmd" token_tool_id="vitessce_spatial"> <command detect_errors="aggressive"> <![CDATA[ - export BF_MAX_MEM="\${GALAXY_MEMORY_MB}m" && + MAX_MEM=\${GALAXY_MEMORY_MB:-2000} && + export BF_MAX_MEM="\$((\$MAX_MEM/2))m" && mkdir -p '${output.files_path}/A/0' && ln -sf '$image' '${output.files_path}/A/0/image01.ome.tiff' && #if $masks