Mercurial > repos > goeckslab > vitessce_spatial
changeset 7:cab38f254824 draft default tip
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/vitessce commit 52576a03742abfab8a623c06e22624f1d8423e3d
| author | goeckslab |
|---|---|
| date | Mon, 21 Jul 2025 16:47:46 +0000 |
| parents | 70c8be4d59e9 |
| children | |
| files | main_macros.xml vitessce_spatial.py |
| diffstat | 2 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/main_macros.xml Fri Jun 06 16:38:33 2025 +0000 +++ b/main_macros.xml Mon Jul 21 16:47:46 2025 +0000 @@ -1,7 +1,7 @@ <macros> <token name="@TOOL_VERSION@">3.5.1</token> - <token name="@VERSION_SUFFIX@">2</token> - <token name="@PROFILE@">22.01</token> + <token name="@VERSION_SUFFIX@">3</token> + <token name="@PROFILE@">25.0</token> <xml name="vitessce_requirements"> <requirements> @@ -78,7 +78,6 @@ #end if && cp '$__tool_directory__/index.html' '$output' && - sed -i 's|display?filename=/|display?filename=|g' ${output.files_path}/config.json && echo "export var config = \$(cat ${output.files_path}/config.json)" >> '${output.files_path}/config.js' && cat '${output.files_path}/config.json' >> '$vitessce_config'; ]]>
--- a/vitessce_spatial.py Fri Jun 06 16:38:33 2025 +0000 +++ b/vitessce_spatial.py Mon Jul 21 16:47:46 2025 +0000 @@ -83,7 +83,7 @@ h=lc_dims[1]) # Build the prefix that Vitessce should use - display_prefix = (f"{galaxy_url}/api/datasets/{dataset_id}/display?filename=") + display_prefix = f"{galaxy_url}/api/datasets/{dataset_id}/extra_files/raw" # if no anndata file, export the config with these minimal components if not anndata: