view macros.xml @ 2:02025c366fca draft

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<macros>
    <token name="@WRAPPER_VERSION@">1.9</token>
    <xml name="citation1">
        <citation type="doi">10.1093/bioinformatics/btp352</citation>
    </xml>
    <token name="@PREPARE_ENV@">
<![CDATA[
export BCFTOOLS_PLUGINS=\$(dirname `which bcftools`)/../libexec/bcftools;
]]>
    </token>
    <token name="@THREADS@">
        --threads \${GALAXY_SLOTS:-4}
    </token>
    <xml name="vcf_output">
        <data name="output" format="vcf">
            <change_format>
                <when input="output_type" value="b" format="bcf" />
                <when input="output_type" value="u" format="bcf" />
                <when input="output_type" value="z" format="vcf_bgzip" />
                <when input="output_type" value="v" format="vcf" />
            </change_format>
        </data>
    </xml>
</macros>