Mercurial > repos > greg > bam_to_psl

diff test-data/output_1.psl @ 0:b6794f4cb1c6 draft default tip

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author greg
date Mon, 12 Dec 2022 14:42:58 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output_1.psl	Mon Dec 12 14:42:58 2022 +0000
@@ -0,0 +1,50 @@
+197	6	0	0	0	0	0	0	+	chr1-106	200	0	200	chr1	1626	3	203	4	125,8,52,12,	0,126,135,188,	3,129,138,191,
+199	2	0	0	0	0	0	0	+	chr1-99	200	0	200	chr1	1626	13	213	2	101,98,	0,102,	13,115,
+200	0	0	0	0	0	0	0	-	chr1-68	200	0	200	chr1	1626	13	213	1	200,	0,	13,
+200	0	0	0	0	0	0	0	-	chr1-3	200	0	200	chr1	1626	16	216	1	200,	0,	16,
+200	0	0	0	0	0	0	0	+	chr1-152	200	0	200	chr1	1626	23	223	1	200,	0,	23,
+199	2	0	0	0	0	0	0	+	chr1-74	200	0	200	chr1	1626	42	242	2	156,43,	0,157,	42,199,
+199	2	0	0	0	0	0	0	+	chr1-160	200	0	200	chr1	1626	47	247	2	183,16,	0,184,	47,231,
+199	2	0	0	0	0	0	0	-	chr1-117	200	0	200	chr1	1626	63	263	2	24,175,	0,25,	63,88,
+199	2	0	0	0	0	0	0	+	chr1-37	200	0	200	chr1	1626	69	269	2	176,23,	0,177,	69,246,
+200	0	0	0	0	0	0	0	-	chr1-121	200	0	200	chr1	1626	78	278	1	200,	0,	78,
+200	0	0	0	0	0	0	0	-	chr1-89	200	0	200	chr1	1626	108	308	1	200,	0,	108,
+200	0	0	0	0	0	0	0	-	chr1-14	200	0	200	chr1	1626	110	310	1	200,	0,	110,
+200	0	0	0	0	0	0	0	-	chr1-61	200	0	200	chr1	1626	117	317	1	200,	0,	117,
+199	2	0	0	0	0	0	0	-	chr1-85	200	0	200	chr1	1626	124	324	2	6,193,	0,7,	124,131,
+199	2	0	0	0	0	0	0	+	chr1-148	200	0	200	chr1	1626	134	334	2	41,158,	0,42,	134,176,
+200	0	0	0	0	0	0	0	-	chr1-102	200	0	200	chr1	1626	135	335	1	200,	0,	135,
+200	0	0	0	0	0	0	0	+	chr1-29	200	0	200	chr1	1626	136	336	1	200,	0,	136,
+199	2	0	0	0	0	0	0	-	chr1-92	200	0	200	chr1	1626	142	342	2	65,134,	0,66,	142,208,
+199	2	0	0	0	0	0	0	+	chr1-139	200	0	200	chr1	1626	148	348	2	117,82,	0,118,	148,266,
+198	4	0	0	0	0	0	0	+	chr1-84	200	0	200	chr1	1626	163	363	3	57,100,41,	0,58,159,	163,221,322,
+200	0	0	0	0	0	0	0	+	chr1-125	200	0	200	chr1	1626	169	369	1	200,	0,	169,
+199	2	0	0	0	0	0	0	-	chr1-11	200	0	200	chr1	1626	198	398	2	112,87,	0,113,	198,311,
+198	4	0	0	0	0	0	0	+	chr1-53	200	0	200	chr1	1626	210	410	3	134,1,63,	0,135,137,	210,345,347,
+200	0	0	0	0	0	0	0	+	chr1-105	200	0	200	chr1	1626	225	425	1	200,	0,	225,
+199	2	0	0	0	0	0	0	-	chr1-127	200	0	200	chr1	1626	244	444	2	97,102,	0,98,	244,342,
+199	2	0	0	0	0	0	0	+	chr1-147	200	0	200	chr1	1626	269	469	2	64,135,	0,65,	269,334,
+200	0	0	0	0	0	0	0	+	chr1-83	200	0	200	chr1	1626	270	470	1	200,	0,	270,
+199	2	0	0	0	0	0	0	+	chr1-36	200	0	200	chr1	1626	271	471	2	123,76,	0,124,	271,395,
+200	0	0	0	0	0	0	0	-	chr1-55	200	0	200	chr1	1626	273	473	1	200,	0,	273,
+200	0	0	0	0	0	0	0	+	chr1-136	200	0	200	chr1	1626	279	479	1	200,	0,	279,
+200	0	0	0	0	0	0	0	+	chr1-64	200	0	200	chr1	1626	280	480	1	200,	0,	280,
+200	0	0	0	0	0	0	0	-	chr1-130	200	0	200	chr1	1626	288	488	1	200,	0,	288,
+200	0	0	0	0	0	0	0	+	chr1-78	200	0	200	chr1	1626	302	502	1	200,	0,	302,
+199	2	0	0	0	0	0	0	-	chr1-111	200	0	200	chr1	1626	314	514	2	130,69,	0,131,	314,445,
+199	2	0	0	0	0	0	0	-	chr1-75	200	0	200	chr1	1626	317	517	2	36,163,	0,37,	317,354,
+198	4	0	0	0	0	0	0	+	chr1-103	200	0	200	chr1	1626	323	523	3	101,48,49,	0,102,151,	323,425,474,
+200	0	0	0	0	0	0	0	-	chr1-69	200	0	200	chr1	1626	334	534	1	200,	0,	334,
+200	0	0	0	0	0	0	0	-	chr1-146	200	0	200	chr1	1626	350	550	1	200,	0,	350,
+200	0	0	0	0	0	0	0	-	chr1-42	200	0	200	chr1	1626	352	552	1	200,	0,	352,
+200	0	0	0	0	0	0	0	+	chr1-66	200	0	200	chr1	1626	364	564	1	200,	0,	364,
+200	0	0	0	0	0	0	0	+	chr1-81	200	0	200	chr1	1626	365	565	1	200,	0,	365,
+199	2	0	0	0	0	0	0	-	chr1-120	200	0	200	chr1	1626	373	573	2	89,110,	0,90,	373,463,
+200	0	0	0	0	0	0	0	+	chr1-143	200	0	200	chr1	1626	378	578	1	200,	0,	378,
+200	0	0	0	0	0	0	0	-	chr1-58	200	0	200	chr1	1626	382	582	1	200,	0,	382,
+200	0	0	0	0	0	0	0	+	chr1-48	200	0	200	chr1	1626	384	584	1	200,	0,	384,
+199	2	0	0	0	0	0	0	+	chr1-86	200	0	200	chr1	1626	385	585	2	162,37,	0,163,	385,548,
+199	2	0	0	0	0	0	0	-	chr1-34	200	0	200	chr1	1626	391	591	2	49,150,	0,50,	391,441,
+199	2	0	0	0	0	0	0	+	chr1-15	200	0	199	chr1	1626	394	593	1	199,	0,	394,
+199	2	0	0	0	0	0	0	+	chr1-8	200	0	200	chr1	1626	395	595	2	99,100,	0,100,	395,495,
+199	2	0	0	0	0	0	0	-	chr1-140	200	0	200	chr1	1626	398	598	2	96,103,	0,97,	398,495,