# HG changeset patch
# User greg
# Date 1670856178 0
# Node ID b6794f4cb1c615bea2d2fd3cf17b178e8a4577a0

Uploaded

diff -r 000000000000 -r b6794f4cb1c6 .shed.yml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/.shed.yml	Mon Dec 12 14:42:58 2022 +0000
@@ -0,0 +1,9 @@
+name: bam_to_psl
+owner: greg
+description: Converts a BAM or SAM dataset to PSL format
+long_description: Converts a BAM or SAM dataset to PSL format
+categories: 
+- Convert Formats
+remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/convert_formats/bam_to_psl
+homepage_url: https://github.com/gregvonkuster/galaxy_tools
+type: unrestricted
diff -r 000000000000 -r b6794f4cb1c6 bam_to_psl.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_psl.py	Mon Dec 12 14:42:58 2022 +0000
@@ -0,0 +1,170 @@
+#!/usr/bin/env python
+
+# This code is very loosely based on
+# the FusionCatcher sam2psl script here:
+#  https://github.com/ndaniel/fusioncatcher/blob/master/bin/sam2psl.py
+
+import argparse
+import sys
+
+
+def parse_cigar(c):
+    r = []
+    d = ''
+    mismatches_x = 0
+    c = c.upper()
+    for a in c:
+        if a.isdigit():
+            d = d + a
+        elif a in ['M', 'I', 'D', 'N', 'S', 'H', 'P', '=', 'X']:
+            dd = int(d)
+            r.append((a, dd))
+            if a == 'X':
+                mismatches_x = mismatches_x + dd
+            d = ''
+        else:
+            msg = "Error: unknown CIGAR: %s\n" % str(c)
+            sys.exit(msg)
+    return (r, mismatches_x)
+
+
+def blocks(cigar, ig=0):
+    # Returns block of matches.  Hard clipping is
+    # converted to soft clipping index on read.
+    ir = 0
+    rr = []
+    rg = []
+    match = 0
+    mismatch = 0
+    mismatch_x = 0
+    mismatch_clip = 0
+    insert_query = 0
+    insert_query_count = 0
+    insert_ref = 0
+    insert_ref_count = 0
+    # Sum of lengths of the M/I/S/=/X operations
+    # will equal the length of SEQ.
+    seq_len = 0
+    (cig, mismatch_x) = parse_cigar(cigar)
+    mismatch = mismatch_x
+    for e in cig:
+        if e[0] in ('S', 'H'):
+            ir = ir + e[1]
+            mismatch_clip = mismatch_clip + e[1]
+            seq_len = seq_len + e[1]
+        elif e[0] in ('I',):
+            ir = ir + e[1]
+            mismatch = mismatch + e[1]
+            insert_query = insert_query + e[1]
+            insert_query_count = insert_query_count + 1
+            seq_len = seq_len + e[1]
+        elif e[0] in ('X'):
+            ir = ir + e[1]
+            ig = ig + e[1]
+            mismatch = mismatch + e[1]
+            mismatch_x = mismatch_x + e[1]
+            seq_len = seq_len + e[1]
+        elif e[0] in ('M', '='):
+            rr.append((ir, ir + e[1]))
+            rg.append((ig, ig + e[1]))
+            ir = ir + e[1]
+            ig = ig + e[1]
+            match = match + e[1]
+            seq_len = seq_len + e[1]
+        elif e[0] in ('D', 'N', 'P'):
+            ig = ig + e[1]
+            insert_ref = insert_ref + e[1]
+            insert_ref_count = insert_ref_count + 1
+    return (rr, rg, match, mismatch, mismatch_clip, mismatch_x, insert_ref, insert_ref_count, insert_query, insert_query_count, seq_len)
+
+
+def get_psl(sam, lens):
+    # Returns PSL coordinates.
+    if sam and sam[1].isdigit():
+        unmapped = True if int(sam[1]) & 0x4 else False
+        if (not unmapped) and sam[2] != '*' and sam[5] != '*' and sam[0] != '*':
+            # Initialize psl_items to those
+            # that constitute a PSL empty line.
+            psl_items = ['0', '0', '0', '0', '0', '0', '0', '0', '+', 's', '0', '0', '0', 'r', '0', '0', '0', '0', ',', ',', ',']
+            # Read sequence length.
+            psl_items[14] = lens.get(sam[2], 0)
+            # Reference name.
+            psl_items[13] = sam[2]
+            # Read name.
+            psl_items[9] = sam[0]
+            # Strand.
+            psl_items[8] = "-" if int(sam[1]) & 0x10 else '+'
+            # Start position.
+            psl_items[15] = int(sam[3]) - 1
+            (interval_query, interval_ref, match, mismatch, mismatch_clip, mismatch_x, insert_ref, insert_ref_count, insert_query, insert_query_count, seq_len) = blocks(sam[5], ig=psl_items[15])
+            # Read sequence length.
+            if sam[9] != '*' and sam[5].find('H') == -1:
+                psl_items[10] = len(sam[9])
+            else:
+                # The length of SEQ is the sum of the
+                # lengths of the M/I/S/=/X operations.
+                psl_items[10] = seq_len
+            psl_items[4] = insert_query_count
+            psl_items[5] = insert_query
+            psl_items[6] = insert_ref_count
+            psl_items[7] = insert_ref
+            # Extract the mismatches using tag
+            # NM:i (NM is mismatches per reads).
+            tag_nm_i = [e.partition("NM:i:")[2] for e in sam[11:] if e.startswith('NM:i:')]
+            if not tag_nm_i:
+                # NM is not ideal because it is mismatches
+                # per # fragment and not per read, but is
+                # etter than nothing.
+                tag_nm_i = [e.partition("nM:i:")[2] for e in sam[11:] if e.startswith('nM:i:')]
+            tag_nm_i = int(tag_nm_i[0]) if tag_nm_i else 0
+            if tag_nm_i > float(0.90) * seq_len:
+                tag_nm_i = 0
+            # Compute the matches and mismatches (include the
+            # clipping as mismatches).
+            psl_items[0] = match
+            psl_items[1] = mismatch
+            if interval_query:
+                psl_items[11] = interval_query[0][0]
+                psl_items[12] = interval_query[-1][1]
+                psl_items[16] = interval_ref[-1][1]
+                psl_items[17] = len(interval_query)
+                # BLAT always gives the coordinates as
+                # everything is mapped on the forwward
+                # strand.
+                psl_items[18] = ','.join([str(e[1] - e[0]) for e in interval_query]) + ','
+                psl_items[19] = ','.join([str(e[0]) for e in interval_query]) + ','
+                psl_items[20] = ','.join([str(e[0]) for e in interval_ref]) + ','
+            return map(str, psl_items)
+    else:
+        return None
+
+
+def to_psl(input_file, psl_file):
+    # Convert a SAM file to PSL format.
+    header = dict()
+    with open(input_file, 'r') as fin, open(psl_file, 'w') as fou:
+        for i, sam_line in enumerate(fin):
+            sam_line = sam_line.rstrip('\r\n')
+            if sam_line:
+                sam_items = sam_line.split('\t')
+                if sam_items[0].startswith('@'):
+                    if sam_items[0].startswith('@SQ') and sam_items[1].startswith('SN:') and sam_items[2].startswith('LN:'):
+                        k = sam_items[1][3:]
+                        v = int(sam_items[2][3:])
+                        header[k] = v
+                else:
+                    psl_items = get_psl(sam_items, header)
+                    if psl_items is not None:
+                        fou.write('%s\n' % '\t'.join(psl_items))
+
+
+if __name__ == '__main__':
+
+    parser = argparse.ArgumentParser()
+
+    parser.add_argument("--input_file", action="store", dest="input_file", help="Input file in SAM format.")
+    parser.add_argument("--output_file", action="store", dest="output_file", help="Output file in PSL format.")
+
+    args = parser.parse_args()
+
+    to_psl(args.input_file, args.output_file)
diff -r 000000000000 -r b6794f4cb1c6 bam_to_psl.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bam_to_psl.xml	Mon Dec 12 14:42:58 2022 +0000
@@ -0,0 +1,40 @@
+<tool id="bam_to_psl" name="Convert BAM to PSL format" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+  <description></description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <command detect_errors="exit_code"><![CDATA[
+#if $input.ext == 'bam':
+    samtools view -o 'input.sam' -h '$input' &&
+#else:
+    ln -s '$input' 'input.sam' &&
+#end if
+python '${__tool_directory__}/bam_to_psl.py' 
+--input_file 'input.sam'
+--output_file '$output'
+    ]]></command>
+    <inputs>
+        <param name="input" type="data" format="bam,sam" label="BAM or SAM file"/>
+    </inputs>
+    <outputs>
+        <data name="output" format="psl"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="input_1.sam" ftype="sam"/>
+            <output name="output" value="output_1.psl" ftype="psl" compare="contains"/>
+        </test>
+        <test>
+            <param name="input" value="input_2.bam" ftype="bam"/>
+            <output name="output" value="output_2.psl" ftype="psl" compare="contains"/>
+        </test>
+    </tests>
+    <help>
+**What it does**
+
+Converts a BAM or SAM dataset to PSL format - https://genome.ucsc.edu/FAQ/FAQformat.html#format2.
+    </help>
+    <expand macro="citations"/>
+</tool>
+
diff -r 000000000000 -r b6794f4cb1c6 macros.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Mon Dec 12 14:42:58 2022 +0000
@@ -0,0 +1,17 @@
+<macros>
+    <token name="@TOOL_VERSION@">1.16.1</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">21.01</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
+            <requirement type="package" version="3.11.0">python</requirement>
+        </requirements>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1101/011650</citation>
+        </citations>
+    </xml>
+</macros>
+
diff -r 000000000000 -r b6794f4cb1c6 test-data/input_1.sam
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input_1.sam	Mon Dec 12 14:42:58 2022 +0000
@@ -0,0 +1,162 @@
+@HD	VN:1.4	SQ:sorted	SO:coordinate
+@SQ	SN:chr1	LN:1626
+chr1-106	0	chr1	4	99	125=1X8=1X52=1X12=	*	0	0	TCATGATTTCTTACCTATTAGTGGTTGAACATCGTGATATGTATGTTGACGGCCATAAGGCTGCTTCTTGTTGTCGATAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTCTTCTCACTGCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTACTGCGTGTAGCG	??A??BBBDDBDDBDDGFGGGFHHHHI6IFFHH?FIHCHHIHIEHIHGFHGIIIFGHIHGCHIHHIFAIHHIIGIHEHIHIBBHIGIGFFHFHFHFEIFEHHIHHHI=FHG>HGHHHG<HHGEFH*G@HHEFGC'FIIFDGGEGEGEAFF>E?EG*EE?EEEGGFGEFGGGGGGE@GGEEAEGDGED(GEEAG??E(FGG
+chr1-99	0	chr1	14	99	101=1X98=	*	0	0	TTACCTATTAGTGGTTGAACATCGTGATATGTATGTTGACGGCCATAAGGCTGCTTCTTGTTGTCGATAGAACTTCATGTGCCTGTAAAACGAAGCGGTAACAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGG	?????BBBDDDDDDDBDGGFGFIHCIHFHIHIIIEH9IHHHFFFI.HIIHHHIBAIIH@FFH5FAEICIAHHGIHDI5BHHHIBH?IGHIHHGHIHHHHHH7IIHH?HHDDHHD,:DHFHHHFDEFGHH*FG4FGG<GFGGGGEGGEGFGGEF?GGFBGEBEACGG:GEGFECAG+G:GEGGGEGECCFGGGCGG6FGG1
+chr1-68	16	chr1	14	99	200=	*	0	0	TTACCTATTAGTGGTTGAACATCGTGATATGTATGTTGACGGCCATAAGGCTGCTTCTTGTTGTCGATAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGG	GGEGECGGGGE1?GFEGGEG:/FGGE:*1F*CGCGGGEEFFFFGEG8GGEAEECGGEF'GGGE8GFE,GG?GEGGEDGHFCHGGHDHGHEGHEIHHHHIIHHDIHIHIHIIHDHHHHHDIIHDHFCIICHIHIEHIHHIIIH?IIAFHHIIHF7IH+FIHHIFFIIIHIHI8HIHHHHGFFGFG5DDDDBDDBBB?????
+chr1-3	16	chr1	17	99	200=	*	0	0	CCTATTAGTGGTTGAACATCGTGATATGTATGTTGACGGCCATAAGGCTGCTTCTTGTTGTCGATAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTT	C:*GFFECEGE?EGGEGF*GGGFEGGEEEGFFFFEE8GGECEE-CEE:GEEE8FHEGGGGE3BBFGEGFGHDA7GCFCHGEHEHHFGHGHHDHGHHFHHFHIHIHHGIIEHHHIGFIHAGFGHIEAI5FIHHHEHHHEHHHHFHAIEHHIIGDGBEIIHHHHIIHHEFIFFIHHHHFHGCGGFGDBDDDDDDBBB?AA9?
+chr1-152	0	chr1	24	99	200=	*	0	0	GTGGTTGAACATCGTGATATGTATGTTGACGGCCATAAGGCTGCTTCTTGTTGTCGATAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTT	??A?ABBBADBEDDDD/FCGFGFIFFIIIEHFIFIIIHCIAFIHHH.HID@EIGIIHHIFIEHHHGBFIEFIHFHIIHGHHHIFHHFDEIHIDIFHDGHIHIHHDDHIHHH1FFFHHG*=FFHGDC5EFGEHG7GGDEGGEEGFG:EGFEGGGGFHGFECEFAGGGGGDGFF.E8GEEEGG8GGGEGEGGFEFGC?F:GG
+chr1-74	0	chr1	43	99	156=1X43=	*	0	0	TGTATGTTGACGGCCATAAGGCTGCTTCTTGTTGTCGATAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGGAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTT	?A???B5BD@DDDEEDEGCGG@IH;IIFIHHHHIAHHBIIFCI@=IHFHH+GHIIHIHIHFF;IFBEHEIHG5HHA<IFHHFI/CHHIEHHHHHFIHHHHGFIGHFGHDHFHHBH7HEHHHEEFHFFEH8+EE*GIE;GFGG3GGGGFGGEFGFHG(EGGEGAGGGGEGEGGAGE:E:GEGGGFEG?EC:EG0EE*D?E>
+chr1-160	0	chr1	48	99	183=1X16=	*	0	0	GTTGACGGCCATAAGGCTGCTTCTTGTTGTCGATAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTATCTTTATCGCTTTTACC	?A?9?BB?@D@DDDEBFGGGGGIHHIIIFEFIIHIHHGHHIHIHHIIIHHHFIDIFIHFFIHCIIIDFFHHFFHIHHHFIIHCIHIEHHHIGIIBHIEIDHHGIDDGHHHHHEHGHGGG3HFFHEFFCGFEE;GEDGGGFFE9G?FGGBCG?FGGGEEGGGDEGGG<GFG?GEBGFGE?GEGG(GGG=AG:GGEGG?GEG
+chr1-117	16	chr1	64	99	24=1X175=	*	0	0	CTGCTTCTTGTTGTCGATAGAACTGCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTG	GEGEFCEGGEG:GGGGGECGA?GC(FCGE6EFGEGGEGEGGGEGGEGGE?;GAE*ECAFGDGFC;HEFDFFH1BDHHGHFHHHHEHHFHHF@HHHHHIIGGGH;DHEHHEHCHAEIIEIIIIFFIIIHHHIHFIIHE?GHIGIHC=IEHFHHIHHHHFIFHIHIIIFIHIHEFIIIIIGGFFCG+DDBD@DDBBB?????
+chr1-37	0	chr1	70	99	176=1X23=	*	0	0	CTTGTTGTCGATAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTAGCGTCTTTCCAGAAATTGTTCCAA	?=A=ABBBDD?DD?EDFGCFGEHEEHFBIIHHIHHIFHGHIHHIHGHIIIIHIGHIII/HHHIHIHFIIHHIIIHBIFIIIIHI7IHHIHDHD3IIHEHHHEGGI6GHEEHBH?HH9GHHDHFEHFDEGHGDDBFACG5EBGF?GE>GGGGGGBEEFEG;EFEGGGGGGGCGGGGE'8EGG:GECGGGEFGG*:EGGCEF
+chr1-121	16	chr1	79	99	200=	*	0	0	GATAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCT	EEE/DFE?CA:GEE?EDGF;GGG0EGGGGEFE:GG?E?:GGGFG@FGCGGEGEH?G+FDEEGGIGG;GEEBHG7HHG.HEHFGHHGGHEHHGH?H?FHHGHCIHHIDFHHHCH.FGGI-IIHHIIFHIIHHEHAHGHHHFDIICIHGHDHHIIHHIGFHIIHIGHIIHHIH>IHIFHI@FGCG>?BDDDBBDBBB??AA?
+chr1-89	16	chr1	109	99	200=	*	0	0	CGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCT	GGFE8FFGGGFGEEEGGEE:CEGEFFGGEEGEG*GEGG.DEECFF:FGCAAGGFGG4EG)FGGEEEFEAG,HGC9HHFGFFG;BGGH5HHGDHGI=DHGF@IIIFHGH@IGFFHFHHIHIHIFHGGIIHHHFHFHIHHEIIIIIIHIIHIHIIIIHIFHHIFIIHFIIHHIIII/IICFGGGCFBDDDDDDABB?A??A?
+chr1-14	16	chr1	111	99	200=	*	0	0	GTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTT	CEGG?F/CEG?AGGCGEGGGGGG,GGGGGEGEDCGGEE??GEGAEFGFGCDG<GCGGEHGCFEEGFGDGGDGHFDHGHF*BFHDHHHFEGEHHHHHH3IDHHGEHHHHHIHIHIGHHHEHIHH;,HIIFFIHAIIDIHGIHHHIHIHFII=IHIHHHHIHEIIIEGID=I>HAIHFCIEAFFF>DDDDD5DBBB?5?A<?
+chr1-61	16	chr1	118	99	200=	*	0	0	TTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAA	GEEGGFGG>GGGEFGAEGG?GCGGGGGGEGFAGG'GE;GEE>G?B=FEEFEGGGGGG;EB;GCGEH*@GHFEHGGHH=HFHGBHEHGGIHIGFFHFEDHHIHHCIHIHEFFCHHGIIIHHFII4@HHIF5IIHFDHGIECIIIIHHGEIIIFIEHGHH=HHHIEIHHFIGHCHHHHIHFFCGGFDDD5DDDBBBB???A?
+chr1-85	16	chr1	125	99	6=1X193=	*	0	0	TTTTTTACTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCC	EG:GEE.EG<FE)EGEE)E6GE8*EGCGEFDECGG=GGGE??GGAGGECAHG:EGEEGG:EFFA;HEEGGFFH:GHGHEF>HHHHEHFFCHEHHHHEHHGHHIDHIHEIHHHIIIHIHIDHDHIHHIIIHHHIAHH=AIHIHHFIGIIIHIIIIIHHHHEHHEH;HHIHGIHIFFCHH;CGGGFDD?D<EEDBB<?????
+chr1-148	0	chr1	135	99	41=1X158=	*	0	0	ACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGTACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGC	??<??BBBBDDBBDDDGFFCFGIIIIHFIIHIIHHHHIHHHHIIIEHHHIHIHFHHIIHIH.HHHIEIIIHHI-FIEICIIHHEIGHIFEHIEFHHAHHIFHFFHHIIF=H,HFEGHHEHHHH=?FGC*B1EHEGGGGGBGEBEGEGE?:EGGE8*GGBGGCGGFFFE@AFGFG?E*GG>G:;GE?GGG:FGDEFGG1?<
+chr1-102	16	chr1	136	99	200=	*	0	0	CTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCT	8GEE*EAGAEEGF9GE8D6?GA;FGEG?GAEGG??CBGFFGCGC*GEGEG:EEGGGFEGBEEGGIEGGAEHGDHH@EFHCGFFHEG=FEFHHGGCGEFHHDIHDHHFEIHIIEIHIGIIIIEH=FIIHEII>GFIHHIH7H8FGHI=HIIGIIHHHIIIDHIFIIFFHHHICHHFI6HFGGGFFDDDDD.DDB4B??A??
+chr1-29	0	chr1	137	99	200=	*	0	0	TTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTT	?????B?BDDDBDDB-GFFEFFHHHHHHIHIHIHEHFGHCIIGHEHHIIII@FGHIIIFHFEEDHFIIHCIFICIIHHHHHHHHHIGHHHEIHG*FHH,AHHFHIDHGH=HHGCG?HHGGEHFHIFBGCBGHHHGI?;EG@?GFD@GAGCGBG18GECEGE2FEG?E:CGGEGEGGFE/EGGFEGFE?GGG8GCEGEGGF
+chr1-92	16	chr1	143	99	65=1X134=	*	0	0	TACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTAAGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTAC	EG;FG0<GEGGG*EE?EEGEEGC;G?FE*EEGG:EEGEGGGECG;0E5GC6EG@GG@;GDGEEFE'EHGGGGEDG5@E'GGHH?(GHHGHHEIFDHFHGIHHFEBG;HHAIHIGHECCIEHHAHDHAFF4IGGIEHHIIFEH>IFGEIHHD>HHHIH@HIIIDIGFIHIFFHHIIFIIGFGGGGBDDDDDDEBBBA????
+chr1-139	0	chr1	149	99	117=1X82=	*	0	0	AGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTGCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTA	??,?ABBBDEDBD<DBGCGFGGIFHIHHIHHFIHHIIIFHIIHIIHEGHIIGHHHIFIGFHIHCFIIFHIIFHGFGHHHEEHHHIIHDHIH/HICIHIDBHHFF>HHHHDHHGFGFC,GHHHHFGHEDGFEFEFGEIEHGEGGG@EEDEGG?FGF@GGEEEFGG6FG5GGGCGF>GGE0;:*CGGGGEG*GGFFFF(EGG
+chr1-84	0	chr1	164	99	57=1X100=1X41=	*	0	0	AGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGTTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTCCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTG	<????BBABDD<DDDDFFFBCGHIHHIH6HICHEFII.FIHIIIFFGIHIIHHFHII#HIHHIIH5IF>BEHIA?IFHIICHHHHIHGII<EHI7.IIFIIGFHHFHHHFGHHHEFHHHGHHGCGGCFGFEFGGEDGGGFEEB>EEFGADFGGDGFG?'GFE?EGEFGEEEGGEGGGAGGEEGEGGGGGGCECEGAG;G*
+chr1-125	0	chr1	170	99	200=	*	0	0	AACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCG	????ABB@BDD@@DDDGGGFDGHIHIIHIHIHHHIE=IHHHFHHIGIIIIADHHIIEHH<FGHHIFHI5=DHFHI5IIIIHII.HIIHHHHHHIBHDHGEHHH0IH=HEHGHHFHHHHFFEHH:HHG9GHDFFGFEDF2EEEEGGBGGHE1EEGECGGCFGE*ECFGE2GGE??EGE?FEEFFGEGGEG6GGEGGGEF:E
+chr1-11	16	chr1	199	99	112=1X87=	*	0	0	TAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTACAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAA	ECGEGGG?(0?GCE.FF?GGEEGGE.EG8GG2ECGGGG*EGGFGGGGGGEGG?GEFGG@,CFEGEHGEHEGBGGHC@GHBDHFGHHGHGHHFDGE=CFHHHEFHHFEIH+IH/HDIFIHDHFECHIHHHHH@H+HHIEEIIFH>GGHEHEIHIFHIHFIHIHIIEGHEFIFIIFHFIHF+FGGGDDBDDDDDBBB,=?A?
+chr1-53	0	chr1	211	99	134=1X1=1X63=	*	0	0	TGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGACTGAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTA	A??A?BBBDBBD?DBDCFGFGGFIIHHHHIIHHFHEBHIHHIIIH8HHH9IEIIAIHHGIHIH-BIEEFIIIIHHFHIIIIHDIHEHHIIHHIIHIHHC.HHHEHFGCD=C*GEHHFGGEGDGF@HFHFFHGEG,G,EGCEHBGD*GGFEG*FEEGEGEGCEGF:GD;G?EE=EEEE?GGEGGGAEFE:GCDEGGEEGEE
+chr1-105	0	chr1	226	99	200=	*	0	0	GTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGA	???A?B@@DEDD@DDDCGFGFGIFH?HIHEIFIG.HIFHHFCHGHIIHHCHEIHHHHIEIII:IF=EIGIHHIIIFHHIGHGHHHI+DHEIH@IHF7HDFFHHBAHFHIDIHGGADD@EHEEEEEGGEEGFG>EGCGIGGAGDGEEGFE'EGDFGEDFGFBC8DEGEAGEGGA8EEEAGGA?EEGEGGGEE6GEE??GEG
+chr1-127	16	chr1	245	99	97=1X102=	*	0	0	ACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTAAGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGG	FECGGGGFGEEEFEC?GGGFGGFGGG(E4;GGEGAEGECFGGAEGEECEG.=@GGEGGFEGEF7GGDDEDFFEH'F.GDDHEGHDHHFFFHHGHHHH*HHIHHIIHGIIIHICIBIHHHIIFIIBIIIDHH-HBH+HHEIIIIFHHHIHGIDEIIHIHHDIGHIHFIIHHCHHFII@CGFEGFGBDEDDADEB@BA???A
+chr1-147	0	chr1	270	99	64=1X135=	*	0	0	GTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGTTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCAC	?=A?ABBBDDBDBADBFFFGGGIHHIFEHHHIIGHIIGDICFHHHAHIFIIIIHFFHHHIIIHH+IFIAHHEH5HICIHGIGFHIHIDIEIHIHGIEHHFIHGHHHHHHDHGGI6EFHF@HEHHGBGHGF@GHFEEEGGGHGEEGFGGEG9DCG8GGGGGEGECEGFFFEFF4GGGEFGGEGGGFGFFGCC8)GEEEGGG
+chr1-83	0	chr1	271	99	200=	*	0	0	TATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACT	??AAA=B@DDDDDDBDFGFG>GIHCIHHH9IIHIIHIGHIFHDIGHIIF?HGIGIIFFGHF?HIIFEHHIFIFGHHHGEIGICECIDGIHIFHF3FHEHIIIHCECHHGHHHGHHGGHHGFGGHHG-FHGEGGHGG9FGECC?GGGEEGAGEGF>GE?CBGFGFFGEFDGHE???/8EEGFCCEGE:6EECEG?GEG=GA
+chr1-36	0	chr1	272	99	123=1X76=	*	0	0	ATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCACAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTT	???<?BABDBDD@.,DGGDFFEHAHHFIIHIHAHHIFIHEIII@IIIIHIEIDHIHIDHIHHGH+IFFHIGHHCHHIHHHHHHHIG=IHHHI5IF5HHFFFHHHHFGGHHHHGFFFGGE)IHH.H@9GGE*GGGGE:AGGHGGEH6GGF:GF)EFGFFG:GGGFEGGFGGCGEG?EGGGEGFG(GEGEGGEGCECGGACG
+chr1-55	16	chr1	274	99	200=	*	0	0	CGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCT	;GECGEGF:GFG*GGCGG9EAG?GGGAEEGGG<;FAEG;CGGCGGGCEGEEFGFFEDEFFGGEIGG=?)DH;:EGFEH?CGH7GFDHHHHDHIHHHHHDIDHHHDIHCGGCIHIHHHDHIIHIF>IHIIHHHHHF-HC/HIFFIFHAIHCIHHIIHGEFFIIHHCEIFGICIIIIHGI?GGGGCDDA@BDDDBABAA???
+chr1-136	0	chr1	280	99	200=	*	0	0	GTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACT	????ABBADD<DDDDBCFGGFGEHHHHHIHIIICFIHAIIHIIFFHHHHIIIHCCCHHIFIHIIHCHCEGBHFIIHGFIIEIHHIHIECHHIIGHHHAHHGHEHH,HHFHHFFD=@HHEHEGHDHGGFGDHHGCFECEEEHGGE6GEGGGGGDF@C*GGGGFGGG-CGEFEEE:GEG(CFGGEGEG*EEGGE?F?GFEGG
+chr1-64	0	chr1	281	99	200=	*	0	0	TTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTC	??<A<BBB@D?DDDDDFGGG,GHHIIHFIIHDHHIHIHE/IFIF/I9HIHCIDHD?FHFIGHIHIIIIHBICFIGGHGIGIIIIHAIHHFHIIFHHDHHHHHHHHH@.@HFHHEHHFHFHAHHHHFGBHEGFH=EEGEEGBGGGGGGEGGCGG0GGEEGEGEGGFA)EFEEG??E:GGEEGF@GFGEG*CEGGCD<EDEG
+chr1-130	16	chr1	289	99	200=	*	0	0	TTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCT	DGEEG?FEGGEDEGCFFGGGFEGGGGFGGFFGBEGEEF<GGE:GFFGGBGGGGEEGGGEGECGGIEEGHGFHHGEGFHDG:FFHGGHIG>*HEHHFHHECHIHGDGHIIIFHII8HIHIIIH5I?=DHIFHHIFIFHHHH?HGGIHH,IHIIHIIIHIIFHFHIIHH-HGFIHIIII8CG?GEGDDDBDDDDBA??A???
+chr1-78	0	chr1	303	99	200=	*	0	0	CCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTG	?AA????BDB<DDBBEGG>GF.IIEIIIIEIHIIIIIEIIHIFGIHFIEFIHFHFHH-FEDFHDCHICHHI5HFGGHHFHIE4IIFGFFHHHI.HIHGIFIIFFCHHHIHFHHFHHGHHHFF@EEGBHH;>GHEA=GGGGEGEEEHGGGGFECGGFCGE;GFGGG1GFGFEAFGFGGFFFE*GFGF8GCEGGGGGGGFCF
+chr1-111	16	chr1	315	99	130=1X69=	*	0	0	AAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGAAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATC	GG?GEE?GFGEECGGGGGEGFGGCEG;CGAC8FGFEGEG8FFGFGGEAEGAEAGBEGG*GGFF<GDGGGDE,GHEHGF+<HEDHIEEEFHEHHFF:HHHHHGHHHIHHHIIIFIHIIIIIIIGHIIHIIF-III?IEIHIHIEH5IIFI=HHBHCFIHIFFEIAIDHGHHIFIFHIFIGFGGFGDDDD@DDBBBB?????
+chr1-75	16	chr1	318	99	36=1X163=	*	0	0	TTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGGAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCT	EEEGGF?AF=EEGCEGGGC+GC:GGEEEE?FGFGFG*.GCEA*GEFGGGHG,DGGFGEGFFGEIGFGGGGDGHFHEGH.HHDGHHFHFHCDH?IDIHEHIHHHHIEFIIIHDFE:HHHFC>FHEEIHIHIGCIHHIEHHIIFCHHHHHH.HIBHIHHHHHIIIIHIHHIGICIHFA8HGGGECGEDDADDD<BBB<????
+chr1-103	0	chr1	324	99	101=1X48=1X49=	*	0	0	CAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGGATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTTTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAG	?A???BBBADDEED?DGFFGGFHH8IFIFFIIFHHHF=HHH=GHHHHHHHHDIIIIHIIIFHHHFIIHIEIGFIIHGDIIIGIH?HHHH?FHHHCIGIGD-,GEIDHFFHAI:,GAHHGDHHHGF*GGHHHHGE;GFGAGGCGGDEGG?E(*EGGGGCFG8FGGGGGEGG6E?GGEGGB9AB:E;GA(GGGGCEG8CGEG
+chr1-69	16	chr1	335	99	200=	*	0	0	TTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGC	EGCGGGCEAGGEGFFAE6CFEGEFG?E0GGEGGGEFEEGG;CGGEFGGGE:GCECGCGGCGGEECBGGEF@FHEGGHGHGBHHFDG>IHIHFHEHHIGHHHHHHH+IFHIIHHGHEHCDHHIIIGFECIICDHIHEHIHIHHHHIF>IHHIHHHIFHH-IGHHGHIIHHIHIIEHIII;CGFGF@DBDBDBE>BB??=,?
+chr1-146	16	chr1	351	99	200=	*	0	0	TCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGA	GG*2GC?EGGCEE<FG?F0GBEG?CFGGGEFG:GGEECCEF?GGG.GEEG08CEEEGFEGCGGGEG=HG?GHCH:GGHEEGHHHGH=6FHHGFEHG=IHHIHHHCAHHHHHHGAIHGHEIFIIIFIIFAH=HIIEHHIIIGHIIIFGHGHHGHIIIIHFIIHGBEHIIHHIHIIHHII;8GFFGDDD<DDDD?BB?A?A=
+chr1-42	16	chr1	353	99	200=	*	0	0	GAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAA	GG?GGEGAAEEGGG;GEE?CGGGEGEEGE*CGAGGFCEGEGGGEEGF;GFEFGGH)HEFFGEGGGGGGGDGFE6GE,<HBGHGHHHGGGDHEHEIHHHIGIHHI/HHIHAHH@IHECGIGHHFIHHIHHFIIIIHDEHGI/IFIIEGIIHBHCI@IIIIHHIHHIIIGHHICI>IIFIGGFFFFDD@DB<?DBBB?????
+chr1-66	0	chr1	365	99	200=	*	0	0	TGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTA	???A?B?B@BEDBDDDFGGAGGHFIHIIHHDI>IHFHIFHIFGBICHEHEFHIHHH5HFHIHHIFIDHHGBHHHHCHDFIFHH+IAHIHIHHFIHHIHDHHFIFHHFIHHIHHFHHFGHHFDFG2HBHFEEEFEF.GGHFEGEEEEAGGGGEGCGG=GGFC?GGEEGB?GGFG8GGEGGCGEEGFEGGDFAEGGA(CGAE
+chr1-81	0	chr1	366	99	200=	*	0	0	GGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTAT	?5A?A??B@DDDDDDDCFGFFGIHFCHFHIHIIHHIHHHHCHFHH8IHHHIHHHIHHHIFFFAFHHI5-HHCIIHFIFHFIHIFIHIH?HHGHHHFFHFFIIFHHHBHIHHH?HIHEHGEEDG8H@ECFGEFFGEEEEGE?GACEBAFGGGCGEDGFFG*?CEGGGGE=GGCFGEGGFEG<CGGG?FAGEAGGGEEECGE
+chr1-120	16	chr1	374	99	89=1X110=	*	0	0	AACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTATCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGT	AEGGG<FGE:GEGGEFAAFGG,8GF?+FGD?EGGEAGFG?EGG?GEHEEFGAFGGGEGEFGEGF0GEG8GEEEGAFHGGEHHGGHHGHC*HEGACHHHGHHHFIHHHHHIIHFHCIIHFIHHDIGHDDIIHIIHE=DIIDHDGHIHHIIHIIGHIFIHIFIIHIHHEIFIIHFIIAI+BFFFGCDDDDDDDDBAB?????
+chr1-143	0	chr1	379	99	200=	*	0	0	CTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACG	?A???BBBDDDD=D@DAFGFFGIIIFHIEHIIHHIEGIH/FIHFHHHHIGIGFI+FIHICIIIFHIHIHIIHIEICHHHHIFIIIIDIFCI=IIFHHHF@HIHFCHFHHHEHHHGHHHHHHGHGGEDBHFDEEGFFEG@EGEGFEFE1ABGGGGFECGF88GEEFGGGGGEEEEGFGEFGFFGEFCGGGCGGG=EE0CEG
+chr1-58	16	chr1	383	99	200=	*	0	0	ACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATT	GC0ECFG6*GGEGGEEEGFGGFE?E:EEEEGG6FFAFBCGGCGEEGGFG?FG<EGBGGEGEE.GIEHHF*GEHEFHHHHE,EHHH:HHGHHHGHI?IIFADHICHHIHIHHCHIEIHIIIHFHHI=IIIIF>IFF?IF-I?HIIEHIIHIHEHHHIFIIIB,IIH@?FEHIFHHIHIEFFFGFGDD@DDDEBBBB?A???
+chr1-48	0	chr1	385	99	200=	*	0	0	CGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAA	<?AA=BBBDDDBDED=GFGFFCICHIIEC>IFIHIIHIIIIEFFE?GIGFHHH8HHIHIAHHFFIEIGIIFIIHIIHGIIHFFIFIHFGGFIHH=HH6IHHDFHHFFCHEH=G?HHHFHCHDHFGH=E,HGGB@CGEFGGGGHCGGGGEGGGGGEFGFGGEGEGGFEA:A=GG<GGGGCDFGCEGGGE?G6FEE?A-EE:
+chr1-86	0	chr1	386	99	162=1X37=	*	0	0	GTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCGGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAA	?????<ABDDDDDEDDFGFGFGHFFIHHHHIIIFCHFHF/F9GIIEFGIHCBGHFHEIDHEAH;FHHHIIHIIIIIIIIHH=HIHIHHHHEIHHIH,HDHCHHHFHHDGHHHGFH;EHHHFHGHFGGFHGD8E*GGFEGGGEGEGFFGEDGG:FGF*EGGA<*F>G<GEGFCCEGGG:G?EGGE>GG??G;EG<GGGGED
+chr1-34	16	chr1	392	99	49=1X150=	*	0	0	CCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAACGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAG	GF;GEEFAE;CFGE2GGG*GFGA?CCGGGCG*:GEEGFGGEGF2GEGE@;EFGGEFFFGGB0GGIGEH:EFFBDFEEGHGFGCEGHGHGH=G=HGBHCHHDEIHIIHHFHHD-HIIHHI,IF+I4HHEIHIHFEGHHC)DHFHG?D5HIH+IFIHIHGHIDH.IHGHHIIICEGHIHHFGFFGFDBDDBDDB8BBA????
+chr1-15	0	chr1	395	99	199=1X	*	0	0	GAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAA	A?A??BBBBDBDD9BDAFF>C;IHCCIIIIIIFIIIAHAGHFHEFIIGI@G,BDGEFFIIIHHEFHIFIIHEDCFHICHHEIHF,IHFFECEHHGIIEFHBHHEHDHHEBFFIHHIHHEB?EEHHGGHGHGGGF4FGF?GGECGEGGCGGEG:FFG?EGGEEGGGGFFEGEGGFFCE?EGGGGG?EGCGG?GAGG:GEF(
+chr1-8	0	chr1	396	99	99=1X100=	*	0	0	AAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCAAGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGA	9????BB8DBBED?DDAGFFFGIIIAHHIFIIHHHHFHHIHIIIIIHIH-GIIAHHCII+CHIH-HEFIIEFHA5HIHHHHIEHIHBIHIIHHI0HFEHBIIFH.F.HHGBHBEHHH7HD1GGGEGEGG=GG6HE;EEGCGGGGBGGGGE;GGGECEGGAGEGGECGGFGGEFGCGEGG+CGG=E?EGG6GEEGCGG4GE
+chr1-140	16	chr1	399	99	96=1X103=	*	0	0	TTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCAGGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACT	EGGCGC<*GEGGCA6-GGGEEGGEGF:GG??EAG?GEGEEDFGCEEEEEGE(GFECGGGEHFBFEFEHFHG<=EHHHF@F7HHHHFGGI?FHFHFF+GFGHHEAHHIHGFHGFGFEHHFHIHGIIIBHHIFIDHEIFHI=*HCAIIIIIHFIIHIAHHHIIHHHHHIFIHIIHHCIAHGGGGGG@DDDDDBD9>B?A???
+chr1-109	0	chr1	404	99	200=	*	0	0	CCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATG	?????B?9<DDBDDDDFCFFGABHCHHFCFGIIHHIHHIHHHHIIHI@HDH.EHHFIIHIFHHIDIIHHI5IDHIIIHIHHFHHHHIHHFEIIHHIHHHFFHDGEHFCDDGHGHE=GIF@DGH6FG+;.GEE@FGEDGEE*GHEGCF;CGCEF8EGGEGGGDG:GFEGEGEEFEGAEECGCEHGEEF8GFGGGGGE?CEE
+chr1-129	0	chr1	409	99	200=	*	0	0	TATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCT	,??A??B-DDDDEDD?GFGGC7IIHCHHEHIFHII?DH@H+IDIHHBIIHHIHFHIGCGHH/HIIHICIIHIIHIEIIIHHHHEH,DIDHGHHIHHHHHGHIFGHEHGDGIHHGHGGIFGFGEHFHEHFGDHGFD@GGFGCFF6GEFEEGGGEEFG@GGFFGE?EGCGEGGFCCG?F:FGGEGEGCAGGGEEGGF6EGGG
+chr1-28	16	chr1	426	99	200=	*	0	0	ATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAA	GGE(GGGEGFG:GGGCE?GFEGE:EGEGAE?GGGAFGEEGGEEEEFGGGGEEFFGFG:GCEEGEGGC;F>EFHHHGGHGGFHG=HHHHHFF?H6EHGBHIFGHFF+<FHIIF7IGF;HFHIHIIIDDHIHF@CIECHFFFIAIIII-HIIIEHIHGGIFIHHIIFIIHHFFIFFIHEEGGFGGFDDBDDDDDBB??????
+chr1-71	16	chr1	436	99	18=1X181=	*	0	0	AGGAAGCGGTAAAAATTTCTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTAT	;?EEEG<EFG0EGEEGGE/E?:CAEEGEEEGGGEEGECEC=G2*EGGGEG;GGGEGGEEGGFFGI:FEBGC>FCEGGHGFDEGHHHGFHHFIHGFHIHC=FIHHHHIFHHIHHHGHFHIIHIIIHHHIHDFHHHIGIHHFI=AIHHHHGDIHHHHHIHIIIIIDHFIHHHFFHHF-HHFGGGEGDDDDDDBDBBBA????
+chr1-126	0	chr1	440	99	200=	*	0	0	AGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTT	??????BBDDDDDEBDFG?B>FIHHFC;HHGEIHHHIFHH:GFHGHIHEIHFHHHIIHIFI+HIHIHFIIHIEIHHCHIFHHHIEIHIHGFHGHFIFHIFHHFHEH+FCHHGGHEHHHGF7HHFFBCGGBHEGAGGGG9GGFEEFGHEEGGEEGGGGGFGGEGFFGEEGEEEGGGFCGGFEGGGFGGEECGEGG/AFEF?
+chr1-122	0	chr1	444	99	176=1X23=	*	0	0	GTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGAGGTAAAAATTTTTATTTTTTTTC	????<BBBB?@DBBBDG?GGECHHHIIIAIHHHIIHHAIHEIEFIHHIHFHHHIIIHIIHHEDIIIEEIIIAHIGHGIHICIGHIFHHDF?HHEHEAHG-HBA;IGHEEHHFHDHGFBHGFHDG=GHBFECHEDHEGEFGEE?GGGEHGEFEBGGCEGEG=FGEGGGE*C:EGBEC*GCGGGC<ECEG8GGA?CFGGD<G
+chr1-25	16	chr1	450	99	109=1X90=	*	0	0	ATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCAAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTT	EFAEGGGFAE9F/FEGFFCGGC?GGGAGHEE=GCEAGGFGEFCEGGFGG*GBFEGCGGCGFCGGFGGBEHFHGFH=EFEFGEGFHHIHF*EHHHBGHHHHFADHEGIII4IGHHGIHIHHGHIHHHI-HHGIIIIHHIIHHHIIIHFEIGIIIHIHIAIIIHIHHIHIHHIIHIHIIIFGFGFFDDDBDDDB<BB?????
+chr1-16	0	chr1	457	99	200=	*	0	0	TTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTAC	??=?ABBBDD@DEDDDFGF@GGIHIHIHIIIFCIIIIIIHIIHIHDDIIHIHGIIIFIHIHH=HGIH5IHHHFIGI-HHIIHHDHFBI+HHH=HEHHHHHEIDGIGCHHHHHFEHHGHHGFF=FDEGH2DFDCFG:IGHGEGDG8GGFGG:G8@EDEC<EEFGF8CG(GFGEEG?EGGGEF*EF?GGE*GGEEEGEGEEF
+chr1-155	0	chr1	460	99	200=	*	0	0	TTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCC	A??AABBBDDDDDDDBCFGGGGH>FIIICEHCH7IGIIDHHHFGIIH>EDIIIHIDHI=HIHHFHHHFGHHI=IEIHH-HIIGHH5HIHHGHDIHHFDHHHFHHIHHFCHHHHEF?EHHHHDFH3BFEECHHEEGEGEGGHFGGG0GH*GGGGEFGEG?G0GGEECG=FE/EGG:GGGGGEGE9GGGEGG9GGGECG8EE
+chr1-128	0	chr1	465	99	200=	*	0	0	CTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTT	?9???BAABDEDDDDDGGFGFEIHIBIHIIHHIIH@GIHHCGHIIFHIIIHGIFIIGHEFHHHFHIFHHHDHIHHIHIHHI+IIFHHH7HHHGFHHCHGHFHF=HHHHHFHGFHCGDHHDFGGGHBFHHGGCEGDBFGGACFFFEGGEEGGGGBEFEGFAG;EGGF0EEGFGD86FGGG1GFGFGA8GGF8GGEEFGFGC
+chr1-158	16	chr1	472	99	48=1X151=	*	0	0	CTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGGTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGC	EF?EE:.60FGE6EGAEE*GE:G*+GGAEECGC;EE4EEGFEGGGEBF0GCE;GEGFEGEABEG2H1FHHHGGEGEFEFGHEDEFHH@FH+FCHHH5DHGFHIFIHIHHDHHIGGGHEB-IHHHHIDIIIH=IGGFFIFIFFHHIFFHHHHECIHIIHGIIEIHEHIHIAHIHFHFIIGFFGGF<?DDDBADBBB?AA?A
+chr1-46	0	chr1	476	99	200=	*	0	0	TACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAA	A??5???BDDD9@DDBCFGF>GIICAIHIIIIHDIEFAIHHHHHHIIHEHIFHIIHIIIIHHHCHHFIH>HIHIH5IFHIHH4IFIHIIFHHHGHHIHFHHHHGGIGBDIHHGHHHHEHHFFCBHGFGFGBEEGGGF5GG*GFFGEEFFGCGEEGB'FGEBGGEFE/=EGGEEEGGG?F::GGEGGFGEEEFE<GGEHGG
+chr1-79	16	chr1	477	99	200=	*	0	0	ACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAG	/EGF=GC*EAGFFEDECA*+GEGGCGGEGGCEECE>E*EGGEEAC?EEEG?ADGGGE8BBG8;DGEGFE<GF?DGHHHCEFDFFGHHEGC@GEHGGIHHIIHHEHIIHHII.HHIHFHE5IHIIIIHDIHEIIIHIHIIHHEGFHEFFHI9DHGGHIDIIHHHFFHDGHHBFIEAFHHFGEGG?DBD@DDDD@B<A????
+chr1-157	0	chr1	480	99	200=	*	0	0	CCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTAC	=??9?BB=DD@DDDDEFGFFEGFHHHIII>HII=IHIIHHIHCAIH@HGFIHI>IFHHDHHHGEHFHFE?IIHIIHDIIHFII=IHFHEHIHIAIGGHHHHFF*IEHBDGGFDFFH7HED,HHH<GEFHGGE,=EIEG:EEFGEGCEGGFAGFGGGFGGFGGGGGEG?BGFFEEGCFCAEGE?ECGGGGGCEG??FEGGF
+chr1-51	16	chr1	489	99	23=1X176=	*	0	0	TCGGCATGGTTTTGTCTAACTTTCTCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAA	EGAEFGEG9?E6EE:GGEFGEGF/G+EGCFF1?EGGGCG*G2GGEGD:*GEECFGAGGBCEA?FGGHGFG8DGEFFGGHGGHH8HHIHG.AHHGHIFHHFIHIGHHH/EIIHDIADHIHHHIGHCEG@HIHH5DIHHIDIIIH.HCHIHIH9HEFAIHIIIGIHH=HIIFHIHFHIIIFFFFGGDDDDDDEDBBB????=
+chr1-156	0	chr1	492	99	200=	*	0	0	GCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGT	A???<BBBDDDDDBDDGCFCFGHHII>FBHI9HDIHIHHHBDIHHHI@HHFIDIFIIFFIHIIEIHIIIHFIHFHIHHIII*IIIIIHECFIIIIIHHHG6IFHCHFHICHHCFHHEHFFHGCGF;GHGEEGEGEEDFHCGG*GGGGCFGFEEGGGGGGFG;EAGFFG*F6G?:E:G0CEGGFEEFDC>:G*?GAGEGGE
+chr1-5	16	chr1	496	99	200=	*	0	0	GGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAA	G0*F:C*GGG*GG>D6EGEGEGE:FFGGGGGEGGGAEAG?GGFGGGGGDFEEEGEGGG:E.GGGFFEDEHGHDHE@FDEH@G:GHHHGHEHEGFHFEFHFHHHCHDIHAHIHIHIHIHIHIHIFBGHIHIHIAHF;AGIHIHIHHGHHIHIHHHHFIHFIIEH>HIGHHHIHIHICHEGF7F>FDEE@D@BDBBBA????
+chr1-49	16	chr1	501	99	200=	*	0	0	TGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCG	CAGGEGEGGGEGE?GGECE4GGCGG?BGEFGEGGEG:GE<FCGFGFEEFGGGG@GEGGGGG*,?GGDHDEBHFFEFHGGGHHEHFHHHHHHHEFHHHIHFIHHIHHIGIIHDHF@HAI5FHHIHII,GCFIIEIIFIFIIHFAIFEHIHHHFIIHHIIHDCIAI,IHFIIIH5IHHIIFFGGGF=DDDDD<BBBBAA???
+chr1-38	16	chr1	521	99	200=	*	0	0	TAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATG	;EEFGG0?AGFG?GEFGCGCEGGG?+?GGGGGEFFGGAGEGGEG?CGGG*EFFGGE?EGEEEAGGECEE*ABFCGFFHEEGHHBHGGHHHEHGHHHIDFFHIH5HIFFHHHH3FHIHIHCFHGIIHGIHGIHFHIHHHIIHGIEHIHHHEIFHIIFIIID@HIIIFIHCHEHIIIIFFGFGGFFBDDDEDDDBBB?????
+chr1-149	0	chr1	522	99	200=	*	0	0	AGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGT	?????BBBD@DBDD<EFGGFFFHHIIAH-HIGI9IIIIID,HHIFHHICGCHIIBHHD7HHIIFIIFHICIIH=HHHIHHFHIIC@HHEHHHHFIH+DCHFHGHHHFFHHH+:H+DHGHHEDGHFGEFGE@GCFFIEGD*EG,EG2GEGEEGGGGGEGE>EFGE'FEEDGEGGE:CEGGG8GGGGEGAE0EGFC0FGEGG
+chr1-33	0	chr1	528	99	174=1X25=	*	0	0	TTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTTCTGCGTGTAGCGTTTATGTTGGTTT	?5A??BBBDDDDDBDDGGFGFGHIIIIHIIHHIHIHGFIIHHGHIHHIDIGHIIDIHCEHIH=IIIFFIIEHHHI<IHIDHIHFHHCDHFHHIHHHGHIFHBHIHHIHHHHFH=GFHHFEHHHGGFFHAE7GFGGGEFECB+EG=H/GGEGFEGBGDFGEGG*EFGAG?GGEGE)GE/EGEEEGAGGE?EGG;GCFEEEE
+chr1-131	0	chr1	537	99	63=1X136=	*	0	0	ACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTAATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTT	?A????BBDDDDBDDDFGFFGF8.IHCIIFFEFHHII0AFIHHIHIHIIIIHIIHIGHI@IIF+HHIHHIHHHDHI@IHIHGGHFIHHHDHF=HFHG-IIHHHFHH:HHGFCHHGHFHGH,I<=GEG?EG6CHFFFEF?HGE=G*GGEF?EG?EGGGEGGGG1GEFEGGEGGGGGGECEGEFFEGAEEECCDAE:FGEEG
+chr1-41	16	chr1	557	99	15=1X184=	*	0	0	TCCAAGTATCGGCTTCTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTA	E*GD<GGF:FGG;G?(ECGGGGECGGGGEGECGGEFGEGEFGG?EG,FEGEGDGEGEDG:GFGE*HGFHHGFGG>HG7EHHGEFFDEFGEEGGHHH<HHHG?FHE<HHFHHHGAEIH4EDIGIIIIIHHHFHIFFHIIFIGHGHHDIHGIHIHI@HHFGIIIHHHFGIIIHICFHIIIEFFGGCBDADDDDDB???????
+chr1-12	16	chr1	561	99	61=1X138=	*	0	0	AGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGCTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGT	GFGE?CEGGEG0AGCGGEGGEG?FGFGGF0FEEF6EE;GGC<GEDGGGGEGGGGGE1G;;G*EADHEFHG5GHHFFHHH.GE=FGEFHI?HHHGHH@HHBIDHHIHHIEHIGHI=HFFGHFFIEHGFIHHHHFIIIHI-IBCFCIIGIICIDIHIHIIHIEIIHH.IIIIIIHHIIIFGGFFEFD@9DDDBDBBB??,A?
+chr1-159	0	chr1	569	99	145=1X54=	*	0	0	CTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCCTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAG	?????B?BDDBDBEDDFGGGGFHEHIIIHIHI9IIHICFHIHIIHIIIHIH>CIEHIIFFHH?HH5EFDGHIIHI)DHIHHEHHBHIIHC=?HCH+DHFF?HBHFIHFHGHIHFGHHFGFFGG+GB,GHEHH82GEIEGFGEFEG)<GEGCG?GGGGGEG;EG?EEEEG6GFFEGDE6GGG?GGGEEGEGEEEGFGEG?0
+chr1-13	0	chr1	574	99	96=1X18=1X77=1X6=	*	0	0	TTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGCCACAAGTACCAACCAGAATGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCGGAAATT	???=?BBBDDDD?DDBEFFFFGIHFEHHFIIIHI@IHIHAIFH7HFFIHHDIFIHHIIIEIHCCHDIHIHIIHFIDHIIIHIIHIFAH=IIHFIIH+HFHIIHHDFHHDGFHFCE*FFHFBF;FEHHEFD@FCGHEGFG-H?GEDGEFCGGEEGGGGF,CG?GGGFCG<GG<:CEE:GGCGGF6F?GCGGEEG(EGFFCG
+chr1-4	16	chr1	580	99	200=	*	0	0	ATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCA	EGFGE:GGEGFGEG:GAGEEGCEGBCE8CE:E?FBGG*EFEGGGGEEG?@GG8DGA')HGCGEFGCCDGGGG1GEHCEHF?HBHEHDFHGGHHDGHHHH+HFHFHIIIFGFEHHIIIIIFHHGHIICHIFHHIHHHIHHCIIHHH8FHFHIFIHGFEIIHHF/HIIIIHIIHFHHIIIGCGGGFBDDDDDD-B<B=??A?
+chr1-10	0	chr1	597	99	150=1X49=	*	0	0	CTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTTTCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTAC	????A<BBDB@DDDBDFGCGCFIIFFHE0HHHHHHHHFIGHIIIIEH=IHIICHIHI=HIGIDIHHGIIFFHEFEIHHIFGHFHFIIIIFHG5IEHHHHGHHHHHHHFHHGHEHDFHHFG<*H?H=FEGHGDFFHEEGGGC@FEGGGFF;0G;GGGGAEF.GGFEGGGEGEFGGGFGGG?GGGGGEGGEGEFG:8EG*G;
+chr1-87	0	chr1	602	99	200=	*	0	0	TGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATT	??9?ABBABDDDD?-DEFEFFFHEIICIHIIHHIEHHIHIHHIIH-HIHIIICH@IHDHIIHFFHHHIFDIHHIHDIIIEHIBIGDHIFFH,HHFDAHCFIHHHGFH@EFEHCFGFGBCHFGG9EHDEGEGF+FHFGFFGGGGG8CEFEFBG;GGEGGGE;EG>GGFEE/ECG/AGCFEF+E;:CGEGF=EGECG?:EFE
+chr1-95	16	chr1	606	99	64=1X5=1X129=	*	0	0	CCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGACACAATTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAAT	(?GGE;GGG:GEGEFECC?AG?GGGGEAEGGEGGGE?G'GEFGEDEE?FGC*EEEGEGF>GGEFGHEFFF*HEECBHEHGGHHHHGBFHHHGDGDFHHHHFHHDHIEHHAHIIGHHHHHHHFFIIGIIHIIEFII;FCIIDHDGIGAIIHHIFIIDIE@HHIFFIIHHIHIIIIFIHIGEEFGDBD?DDBBD@BB?A,??
+chr1-123	0	chr1	609	99	189=1X10=	*	0	0	GTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGGATTAAATCGA	??AAAB?B<BDD<DDDGFGFGFCIIHHCHHGCDGIIIFHIHHIHIDEHG5IIHIHEH@FIHH>II5HHFEHHHFIFGIIHIHHHHFHIGIHIHHHDHEHIFEHHGFIHFHFF>HHF@FCFEHEGGHGEHFDEGG3IGIGCFGEGGE/GGBDGGEFFEEGEGGFEFGEEFGG?G;GGEGEGGGGG>EEEF*GCGAEEGGGE
+chr1-23	0	chr1	622	99	122=1X77=	*	0	0	GTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACGTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTT	,?AAABBBDDDDDBB@FGGGGFIHFFIIIHIIIIHIGHIHIHIHH=H+IDIIHIFIICHHHHFHFIHHFDAEHIHIIIII=IIHHIGH/I7HFFEH;HIFHIG?HH3HHIHHHGGFFHHFGH,H@DDBG:EEHGEGGEGFEEEEGGGEGEGECG:EGEEFEGGEFE<CGGGC??EGG8CGEGGGEGGECEGFAGGG:GGG
+chr1-113	16	chr1	638	99	9=1X22=1X109=1X57=	*	0	0	TTTTTCTCATTTCTGTTACTCCAGCTTCTTCGACACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCACGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAA	9FGGECGGE*GG;AF*G9EGE6E?EG?EFEGE(E:GGGGGGGC;EEGGGEGEGF,-EGGEEEDDGEGHGEGHEGFFGEEGHCEGFEFIGF3CHHGHHHFIIIHIIFFFHDFFIIFGIIIHHFIIFIHIHHHEIDHIIC.FGG-HEFHHHIHIIIHHGEFHHHHFHHIHIIFIEIEIIHGGGGFFDDDDDDDB=BB??A?5
+chr1-112	16	chr1	655	99	200=	*	0	0	ACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACG	GFGGEAFFCEEGGGEGGGGE=EEEECGGGEGA8GCGG:AEGGFG8G*EFGGGG?FFGE@FECIAGBGGEFG*GGGGEFFHHHFGGDFD=HHEHHFIHFIFI=FIHHFHHHHFHDDHDHHIHIIHI>IHHI?IHIIIHHEHFG@8.IIFIIIIIIIHHIHHHFFIGAICHIHEHHHIIIFEFFCFBDDBDDBDB???????
+chr1-59	16	chr1	657	99	194=1X5=	*	0	0	TCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTAACGAA	EG*GG'?GGGCEGG*GE;E+A:GEEEFECGCG,*FGEFGEGEE?EGFFGE;GGFG.DG?FGCB2GHFHHD?F@FGHHEFCGGHHFDHHHHGHHDHHBFHHBHIFHFHIHIEIFIIHGIFDHGEIBHIIEDHIHHIHHHIIHHAHHIHFHIIIFIIHFIGHIIDIFDIIDHIIIGEHFHFGGFDGDDBD@DBEB-B?,??=
+chr1-2	16	chr1	658	99	15=1X184=	*	0	0	CCAGCTTCTTCGGCAAAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAAT	EGF(EDGGGEFGEFF1AF?G<:A6G?DFEGEFEE*EEGE*G*EEE(GEE9G9F/G*GEDGE;F:GE=FGEGGGEFHGHHFGGEGEGHHHEGGFDIGHHHFHHDHHHEEGFECGIIHHHHHIFHIHFIH>FDCIHHHFI8FIHHIFDI0IGEDHFDGFHFIHHIFHHHAIIIIEHEFHHGGGGGFED?B<DDBA?B??A?,
+chr1-88	0	chr1	667	99	200=	*	0	0	TCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAA	???<A@BBDBBBD+DDCGFGG,IIFHIFIHHFCIFIEDHAHHFIHIGHHHDBHAIIHHIHCHHFHICHIHHFIICFHHIDIIFGIIIHHIIHHHHIEHF=EHF,HGFDH4EGHGHHFHEHH=FDF>HGHEG>/H?FEEG*EGFEEE?G?EFGEG*GGGEGC=GD-GGEEEEGEGGFA9CEEG?GF?GE<:CEA?FC>EFE
+chr1-118	0	chr1	678	99	200=	*	0	0	ACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTG	?????BB?DDBDBDDDFAGF;FEHIHFIHHFIDIAHEHHIIIHIHHHIH?EHFF9AIFIFHECHIEBIHHIHHHHIIIIFIIHICH?II<DHFF+?GB>IHHEDCH?HEH;HHHHHFHHE,HGEHGEEGECF?EGDGG8*F=GBGGGDGFFGEC?EGEFGGG?G(GGGE*GG?G<GGG?FFGEGGF0GGFEFCEECAE6G
+chr1-62	16	chr1	685	99	12=1X187=	*	0	0	AGAACGTGAAAAGGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTAT	A?FEGFEG=6FG*GGCEGGDEGCFEFG*EGGGE*G'EEEA.GEGFGE1FG*GEGGFCGEFGGGEFGGEEFGEEGFFDF-HGFHHGECHIHHF@EHFGFHBDCIIHIHHIHIIIHIIFHIHHHIIIGIGFHFFHIHBDIH=IEIIHHIHIHIIIHCHDG?IIHIHIIHDIH>III/IIHGGGFGADDDBDDBDB><?A,<?
+chr1-52	0	chr1	693	99	124=1X75=	*	0	0	AAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGGCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGG	???A5BBBDB<DDD@BFGGFFFCIHHH>HIHI=HIAFAHHFHHHFHIHHHIHIIHHHIHIHIHHHHHHHEEHIHEIIIGHFFI-FGHI8IHHHHFDHIHDIIHHGHHGHHHH8HHEHFHHBGGH/GHGGGHFFGDIFGECF*@GG;GFEGEFEGEFF?C:G;GEGGCCFFE9FFG?FEFGCGEGGG=EGEEFEGG:G2ED
+chr1-107	16	chr1	695	99	74=1X125=	*	0	0	AAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGTAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTT	GE;GEFGEGFGEF:GG;FGG?GGGEG.?FEGECFGGGEFGGGGGGCGEE3GEFGGCEGEC@CFEGGE@EGHCGF.GHHFCGHFFHDHDHFHHFH?HFHDDIHDDHFGHGHIDHFHHHHHIIIIHHHHFHH-IIIIIIIIF@HHIIG.IHHEHGFIHI>FIIEIIII+IIHIEIEIIIHG>FGFGBDBBD?DD?.B???A?
+chr1-72	16	chr1	698	99	86=1X113=	*	0	0	GCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTACCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTG	*E?FEGGGGG?GGEE:EGEGFGGGG<EGGE)FGEFF=EG9GGEG*FGFEF?G@GEGE4GDEGGFEEG4EDGEGG+FEBFFFFHEFE-DHEFIGHHEIHGDHIFEHI<IHBHF5HFEHIIIIHFFIGIIIHIHHGDHFIFHAF?IIHGIIGHHIIHIHHIHIHGIDFHIIIHFHIHFHAFFFGFGDD?DDDD<B>B?????
+chr1-114	0	chr1	699	99	157=1X42=	*	0	0	CGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAGTTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGT	??=??BBBDEDDDD@DFG>>FFIHIHIIHIICHIIHHFF7FIHHHHEAHFCIHIHGF@IHIIHBHHHFIIGIHIHDFHEIIFHFEIHH*HIHEHHI<GCHDGHHBBHFHHCGEHHFHDHGGGFHB@GDFGHG?GECG4FEHGGCEEFGFDF@GGGGGF;EDGGEFCFCE)FDGEEGGGGCAEEGACG?GGFGGECEGGGG
+chr1-65	16	chr1	702	99	200=	*	0	0	CCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTA	2GGGFEA<'GFGGDGEFGGFDFAGGDFGGFGEEEFEEFG)GEEFGGFGGEEGGGCBE*HG9EGIG*GFGEGDGG=G2DG=GGFGHDDHHHH@HHDHEHHHHIDIHIDIH@HIIFHIFHIIBEIAHHIHIIHIFFIIGCGHEHH+AICHHII/HHHIIIFIIGFHIIHIIICEHIIIHHFFCGGGDDDDBDD@BB??????
+chr1-134	0	chr1	707	99	200=	*	0	0	GTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTT	<?A??B-BDBDDDDDDGFFGFFHCIIHHHHHHIHIHAIGI9IAHIIIHAHAGHHHHHIII?FHIHHFIHHHHHHIEFIHGHHHIEIHHHCHHGEHIHIH@GDHHHHHHGGDH<HHEHCHEEFHGGGFEFCEGEGEGECGGFGEGGEGDEGFG*E=GGFGEGAG*GEGCFGG?FEG?GFEGCGFC@GG*CGDGGCGGFGG;
+chr1-91	16	chr1	717	99	200=	*	0	0	TATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTT	CGGGG'CEEEGFFEGGFGGEGFG;:FGGG8AECGGEFGGGGEGGGHG>?EGGECDEGGGEGFGGC*GGGEACFGHHHFFF+GFCEFHHHDH+FHEHFHHHIGFHIHHHHI>IH-HHHHIIIEIIHIIHHFHHHH@HFHHHH=HIHIHHIID@IAIIFIFGIIG@HH@ICH,IHIF/EIFG;AFCD?DE<DEDBB-?????
+chr1-63	16	chr1	717	99	200=	*	0	0	TATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTT	GCEGGGGGGGFGEGGGEAEDGFEEEEGEGCE?FFGGEGCGGG;GFGECEGGFE*FHEF1GGGCFDCGFDGGH:FFFEFEHGHHEHIHGHFHEH(HHIDHFHFHHFA@GIH8GFIGEEHIHIIHI3HCIHHIICGHIFHFHEDIAIHHHIEF5IIIHIIIIHHFEEIIHHEHCHHIFIFFGFFFFD6DDDBDBB?B???,?
+chr1-39	16	chr1	721	99	125=1X74=	*	0	0	TTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCATGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGT	GEGGGEGGGCGCEGGEEEGEGECFEFGGEFECEEGEFGGGGGFGGEFGGFCE@GGGC@ECCGFAGHFGHHEHEDFGG;HEFGGGGHE)HHH=6HHI=HHAH=HHHHIHHGHI@IHHIHHIHEHAH,HIIHIIHIIAIHIIFIHHFIEIDFHHHHIH9IH5BIEHGHGIHDHIHIHHHIFGG?GCDEB5DDDDBB??9???
+chr1-24	16	chr1	724	99	57=1X142=	*	0	0	GTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAACTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTA	=EGGEG:GGGFEFGEE(GEGGGGEFF?CC?CAGGGFGEEGEFGCGFGEGFGGFEEEE*25EEEE?GBC+GG8GEEGGFGFHFFE7EEFHHH,EHDIHFGIFHHIHI7FHDIIHFIIHHHIHCIFCIHHAIFGIIIHHIGHIIIHIHGIIHIH7@IHIIHI9HHGHAFIFHIC6HHIIIGGFGGGDD<EDBDDBA=AA?A<
+chr1-70	0	chr1	729	99	200=	*	0	0	ATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTT	?????AB?D?D?DDDBFGG?GEHI/BIIIEGHGH@HIHIIHII,HHFIGIIF5HI7HIIGI=HCHHHFIHIHHHHI;HIGHIHHEGHH=FIIFHIHDHIAIHHFHHEHFIHHHF=HGGGGGFGHHFGABGD<FGEGEFEGFBECEEH,GFGFGCEGG8.GGCG=GCGCGEGCFDEGGEGFGG*GGEGEFGC?G:CGEC)*
+chr1-77	0	chr1	734	99	200=	*	0	0	TTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGC	???=?BB@DDDDDDDDFFGAFFIHHE08HIFHHHHIIIIIIIHHIGIGHHH?IIH8AH?HAFIHIGFHGFHD@IHICHDIIHIIHAIHHIIHIHIHIAGEFHFFHHDHFFFFHIH,=HFGFDHFGHCGHFGCCAFGIGDEGEFFFFFFCGGGBG:GGCFGGEGGEEFEGGGGCEEGGGA2G@GG:GGGGEFGGEF?G8GE
+chr1-73	0	chr1	736	99	200=	*	0	0	TGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCC	?,???ABBEEBDBDDEGGFGFEIHBHIIIHIGHIHAFI8FIEIIHIIEHH5IHIHHHFGHHAHCI:DEIEHHGGHIDFIIHIHDIIIHEIII;HI0H=EFEHHHHBFHFFHHEE?DDHGFHECHG5HB>HEEF6GEA3CFEGEF(FGBEBFHEGG;GGCGGFG:GGEGGFA*EFFE*AFEEGDGF6G?GGGCFGE:EGGC
+chr1-31	0	chr1	736	99	78=1X16=1X104=	*	0	0	TGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTAACGTCTTTCCAGAAATTCTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCC	??=??B9?D?DEDDDBGGE+GFIHIHHHI>HHFHAHICHHEGHHIIIIHIIECIH+FIHIIIFDHFHFHIHHD)ICHI'@HIFHIIHIH=IHIIHEFDHHI@IA@IEHHDHF@HHHHGHFGGHFFGGGG@EGCDGDC*GGCG=EG*:EGGGEEGGGEEECFGGGGGGHGGG.FGEDGEGF<EGEAE*FGEGE)G(GFGGE
+chr1-108	16	chr1	767	99	1=1X93=1X42=1X61=	*	0	0	AAAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAACCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTCTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCT	E0EEAEGG:AG?CFFC/EGG+GEGGGECDGE0GGGEEGGGGEGGFCFEEGEEBFEFGEGD;FEEF6GFGFE)HFFDHGHHHHCHHHHGFEHH@FH'G;DHHIHHHIFIH=IDDGIHHHHIEHICIIIIHFEAHHHIFF,HIHEIIHIIHDIBH-FFHIHGIHIHHFIHHHHEIICFFIGFGGGFDDDBD<DD?BB?A???
+chr1-138	16	chr1	772	99	28=1X14=1X156=	*	0	0	TTGTTCCAAGTATCGGCTTGTTTACGAAATAAATCGAAGTTACTGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTT	EG;DEGGE*GEEGEEGFGGGCE:FFGFE(GGCEFG0GGGGGGG#GFCGGEGGGE;DGGEGEEGEGGCHGHGHHEHEHHH,FGGHGGHIE+E?HHFI=FCHIHEHHIHIHHHHIEIHFIIDHHIHI-IFFHIGDFFHGBH5HFHHIFIEHHGIIIIHIGHIHH.HIFFHIFHIHHIIIHGFGFAE?D.DD@EDBBB??AA?
+chr1-104	16	chr1	780	99	200=	*	0	0	AGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTT	GGG6AG6E9GF0E=GEGFGGCGGF?EG)GEGGFC'GGEG.CEE=CEEAEDGGGFGAGEEGGFGGFFHGDFGBEHG6HDEGGFHGHGH=GHI3.FHHGHIBCHHF+HIHHIIEIGHHCECHIIEEIHIGHDIIIIHH-IHHEHHDFHHIHHGHIIEIIIHHHIHFIHIHIFI?FBHHBEFGGFFEDD<DDDBBBB??????
+chr1-97	0	chr1	789	99	199=1X	*	0	0	TTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCA	==?????BDDDDDEBDAFFGGGI;FFHHIFHIGIHHIHEFHHHGHIHHDIFIHIII.DDIGHHHHIFGHGHCIDHDIIH?IIIHHHCHIFGCIIHFHIHGD.HHDHIBHHDGFIHHHHGGDHGHGEDF@GGEGB?GG8GFF6(G1GGGGECG=GGGG8@:GGEEHEEGEAE*CEGCCGG'G>GGGGGGGGGFGA(GFCF/
+chr1-76	0	chr1	791	99	200=	*	0	0	GTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTT	????,B?BDDDBDEDEFGFFFEIFIHHIIFH7I@IIH7IHIGIHGIHIHIDI;A7IHHHFI?FHCCGHDEFIHIHHHIHAIHIIHIHCGEHIEHHFHIIHIEHGDCIH)FHHHHHEG@FHEGHFEEG3@GG9GFEIGEGGGFEEEHGG;GGEGEGGGE*GGGGGECG*FEGA*8FE6A4>?GEG(:GGEGEEGCA0EG8G
+chr1-19	0	chr1	796	99	125=1X74=	*	0	0	CGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTGTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGA	<???A??BDDDDDDBDFGGFGG>EIHHHHHHHHIIHI7HHHCHIIHG=GIHIIHIHDFIHHHI-FIHDIIHGIIFHHHHIHDHGHHIIIIGHFFHHCHHIHFEFEHHHIHGGHIHFGG<EEFGFG*HGGFGEGGGGEFFE3HGGGEGFG,G>EEGGEFGC)EEGB6GEF?GG?EE<GCFFEEGGGCGAGEEGGGEGG0DE
+chr1-151	16	chr1	814	99	79=1X120=	*	0	0	CCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGCTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGG	EGGGACGGCGDGGC?GCGF<GGACGEEGGGEEGE8EG8FE8;GGGFEBGGGGGGGCGGEE=HECEHHG(FGECCFHHFE'DCHHEEHFHGHHHGFHIHHHFHIGGIHIFBEHIHIIHHHIIHHIHIBGGEIIGIIHHHHIEHID8HHIHI@FDIHDHIHHIIFIHGIIHCI8HHIEIHGFGCGGDDDB<DBBBBB?AA5?
+chr1-20	0	chr1	825	99	200=	*	0	0	GAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGA	A??=?BBBDBDBDDDBGFGGDFIHFHHIEIGDDIFHHH9IIHFHIHHHIEHIHHHHIIH=IHDIHGFIIFIHII-HHHFGIHFDIIIIHEIHI5EFGGCEHIHFHHHFGIHDHHFGH:FFDFG1FHEGDEGGEG8?FGEGG6:EGEGFEEGGGFG*EGGFEFEF?EGFC.E6:FEGGEFEGEGEGFEAE?GGG'AGEGEF
+chr1-110	16	chr1	828	99	45=1X154=	*	0	0	ATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACCGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATT	EGEGGGG<E8?EGFAE?AGGCG?*GEGEGEGG0FGGFGGG?GAFE)GFGGFEGGCFGFFHEEGE5BGFGEGGDCGH?H;H?H;FHHHHEFFHFHHHHGHCEHHGAIIHIGHIIHHEHIHFIIGIDHIHFIHIHIHHAHIAHGHHIHHFIIIGHIIIEICHHHHIIII/7HIIHICIIIFFF6FGDEDDDDEDBBBAA???
+chr1-26	16	chr1	833	99	28=1X171=	*	0	0	TCCAAGTATCGGCTTGTTTACGAATTAAGTCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATC	CGGG<CFEGFGEG?GGGGGGE1E:EEEE(GGEGEEGEGGFGGGGEGCGEGFEG;G=EGGGGCI=@E9G?HH;FGGEFGFDHGGGHDFHHGHHBH5FFCI;HBHEGIIFHIHHIHECHIIIHCIIGIHGHIHHIHGAGIHGEGFHIGCHHIIHIIH9HHIFEFCIEHH/IGCHHIHGIFGGCCFGDDDBDDAD<B@???A?
+chr1-35	0	chr1	835	99	172=1X27=	*	0	0	CAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAATATCGGCTTGTTTACGAATTAAATCGA	??AA?B??DDDDDDDBEFFFFFIHEHIHIIHEHGIDFFGIHDIGIFHIHHFICFIFIIHHHII5FHDHIHGHH=IFG?+IHFHIHHIFHHIIHHIHF)CDHGHIGFBHFBGHFHHHGG;HHHGFFG?GGDGHGEGIGGGG.;GE2ECFGEEG@GEGFEE0GAGAFG?AGG8GGGAGEEECFG<GGED:GF>EG:FCGGEG
+chr1-56	16	chr1	881	99	44=1X155=	*	0	0	TTATAACGCTGGTTTTGTCTAACTTTATCGCTGGTTTTGTCTAAATTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACG	CAGFEEGEGGGDGE:*EGAG>EGGEBGFGE;GGEGGG6FFGGCG(EGEGG@E7GGGEGEEFGGGGGE:?HEEGHHGHCEDHGHDFCGI=HHHIHHHHHHHGHHI8HHHHIHHCHIHAIHHIIFFA,55BEFHHIHHFHCIIIIIH+II+IDHIGF@IIIIHHICIIHGIFF9HIII+HGG2GFGDDBDDDDDBBB???<?
+chr1-60	16	chr1	899	99	30=1X135=1X33=	*	0	0	CTAACTTTATCGCTGGTTTTGTCTAACTTTCTCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGAATCGGCTTGTTTACGAATTAAATCGAAGTGGAC	>CG6FGEGEG:GEC)GGF)EGECGGGGGGE(:G0GGFFGEFGGGFFGEGGBCGEGGBGGGGHE6F@G77;GGFFC?HHEGHHFHE?IG?HEHGFGH?HHFHFHGHEIGAHD,HHII+EGHHIFIGIBIIFIHIHHFCHF@IICIHIHHIHGHHHIHIIDHHFIHHE-AHHIEHHHIC>FFGGGEDEDBDDDDBBB???=?
+chr1-50	0	chr1	904	99	200=	*	0	0	TTTATCGCTGGTTTTGTCTAACTTTATCGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTG	5???A?BBDBDDDBDDGFGDFF7HIIFFIEHIHIIH@HIIIGHHHBIEHIGIEGG@IHGIIIHFIGHIIHIHICACE>FIIHHIII=IHHHDFFG*HIHGFHIIHI=H+FHHHBHHIHFFEHGFDHFGGE?AG'<FI@EHEGGD'GGHFEEGE*CFGGCGGEGGEGEE,GCEG8GGGFFCG*G8/AFGGGGG/EEEEGFE
+chr1-40	16	chr1	912	99	28=1X171=	*	0	0	TGGTTTTGTCTAACTTTATCGCCCTGTGTCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATA	FCCFFEGGG*:GGCGGEEF:?FGGGEFG'EG8GGGGGGGGEGGGGGCDE6ECGEEGE=EGGGEGC3CGEGHGHEGGFDH;D@HEHFFGFHHIHFHGHGHHIHIFIHIH,IFIFH,H.HIGAHHFHGHIHDIIIGHHHACEHIIIHHHIHHIIICHHIH?IGHHHIHHHHHFIHHHII?GGGGFFDBD.BDDDBBB?A???
+chr1-124	0	chr1	931	99	200=	*	0	0	CGCCCTGTGGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCC	????A@B?DD@DDDDEGGGGFGHIICHIIFIHIDHIHIIIHIGIHIIFIHI8FFIIG8HCFHHEH-IIIIH+IIIHIIHHHGHHHFHIFIIHGHHHHHHFG5FDHDHHH-IEFGHHHDGH;FFFHH@FFGGGGGHFIFGGFG?GEGG4HAG8FEEECFGG>FFGEEBEG<EEGEAECGECGEEEFGGGAGECCG(GEA.C
+chr1-30	16	chr1	939	99	200=	*	0	0	GGCCTGTTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTG	DGECGEG:EGGGGGGDEEDEF?GGE?GEGCF4GGGGCGFGEGGEEE*1GAGGGGC+FFGFDGFEGGDFEGG9EGEFFHFEF?GHCGFHFDCHHHCEHHHFHAHIFH?CHFIHIIHFFDIHGHIIIIHH3IHHIGIEIIFIGI8IIHHIIGHHHFHIIHIHIGIIHCIIHHIHHHHIHCFFGFFGDDDBDDDBBBB???AA
+chr1-18	16	chr1	945	99	200=	*	0	0	TTGATTCTAAATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAA	FGFECGGE4FEECGEGCGGGEEFGGGFAGGG:GGGGGAGGEGGFEGGEFEEGGGDG)GDFH3EGEG8HGAGGEEGCCFHHHGG=HFFGHEFEHHHGHIDDHH?FDFFFHHHIHCIHHEEHHHHHIIFHFICHHIIIHIIIHG@GHHFIIHFEIICFHHHHHFHHHDIIFHIHIHBIIIGFGGCG<DD9DD.DBBB?A???
+chr1-80	16	chr1	959	99	200=	*	0	0	TTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTT	G?GGCE'EEGGFDGE?GGGGGAGGGAEGGFFEGEGGG:FGG??@GFEC;G9CDGDEEG?FGEFGEGFBFEGGFGHGFGBHFFHHFEEHFH:H.HGDFDHIIDHIFDHHFHIHDIHHIHIHIEGIIGIHFGECIHHHIIHHHFIHIGIHHHGIH=FHCHGEHHIGIIDGFHIIHIIHIHCGCFGEED@E@DDABB??????
+chr1-142	0	chr1	964	99	200=	*	0	0	TCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAA	?A??=BBBDDDDDDDDCGGGGFIHHHECHHDIHHHHGII0HIIADHHFIHIIIHHFIHFF=HFHIIE8HB>FIIGI;I-IHIIHFFHIHIEHEGFI.HIHHIHFHD?H9@HHHGH@HF)FEDBFFFEFGEAEEHFI?GGAGEGFGFGGGG0BGAFEFGGECGGEGDEGGA3FFG?ECG8?E:ECCGEGGC>G:GEG6GGG
+chr1-6	0	chr1	971	99	120=1X79=	*	0	0	TTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGCAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATC	????ABB<:DDDDDDDFGGGFGHIFBHIICGHHIIHHGHHIHIHIAFEIFCFIHCIHHIHIFHFFFHHHEIGHIIHICHHFHIADI=HH+IDFHGHIIIHCIHHHH>FHHHHFHHGG,@H->:EGFGGFGHFFG>IEBDGG8G?GGFCGG?GGA?EFGGGEGEGGEGGGGGEGGEGFGGEGGEE(EGF;GEEFG2CCG?G
+chr1-93	0	chr1	973	99	95=1X66=1X37=	*	0	0	ATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATGGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAGTTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGA	???A?BBADDDDDBD@>FGFCFHHHIHIIHFIGIHIIGCEIIIHIIIIEHFFHHHFHIIHHBCHIHHHIHIIHHGGGIGHGHHIIFDHA7IHC+I,HHHHIGGEIHHFHHHHEFHEGHHGHGI@GH@EFGHE;EF,GIEFGGEHEEDGEGEDGEEEEEGG?F;CGGCGFEEEEGEGGFFAEGE;EGEG<GECFFEE?GAG
+chr1-96	0	chr1	980	99	200=	*	0	0	TTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGC	?A?,?>BBDD?BBDDDGGFGGFHIHCHFFAIHIHHCHIHIIIIIHHIGFEIAHHIAHHHHHA5HHHHIFFIIIIIECHHGIHHFHGG?IHHHHH.EDHDGHIFHH=HHHEBFGGHDHHEGGH=DG>EGGFHFEEB?EGGG?'EGEGGBG/GEGGFFGG?FD?0GEBGG;GGCGGG1GGAFGGGFGC*E-?.DC8GFCFCE
+chr1-154	16	chr1	984	99	200=	*	0	0	CGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTA	GFGAGGECCGGEE8GGE4CGGGCCGFGE)6GFGGGGGEEGFGGGGFGE=FGGCGEEFGEFE*GABFEGGFDH?D*GFCGFEDGHAFH4HGHEH;HFHIHHG<IHHIIEIHIH?FIAIHDHHIHHFIIIHHIIHCHH5HGHGHHIHHIH0F0IHHIGHFEIFIFICIFIHIIHEF>FHIFAGGCFBDBDDDDDB?B????A
+chr1-32	16	chr1	984	99	2=1X65=1X131=	*	0	0	CGACTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGGAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTA	E(*F=EG*GGGEC?FGA>EEE>GE:>:EF>EGGGG=GGAEGGGFGEEGGEGG0GEGGGCGDG3GG?HE'FGEGFDEGHCHFHHFDFGHHHHGHIHHCHHHHE8HHFDIHGEIHG-FHIHHIIHGIGIHIHIFHIHIHIIIHIIHHEIGCIIHIHHHHCHIFIIIDHDIFIIFFIHHCFGGGFGFEDDDDDDDBBB????A
+chr1-150	16	chr1	987	99	34=1X165=	*	0	0	CTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTTCGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAA	G<?FGEFEGGFECCEGEAE'GGEA;GGAEAECEG*EGGGEFEGEGDFEFEGFGEEGGGGBGFCB>BEEEGEAFGHFGBGHGFDHHHBGHFIHH?HHHH?F?HFD3HHHHGIHHHIGIIHGIIIIHIHHIH?IHHHFFHIIIHIGHIIH8HH?HIEIFFHIIHHHGCHGIHCHIIHAIFCG;FGGDEDDDDDDBBBA?A??
+chr1-90	0	chr1	1006	99	126=1X73=	*	0	0	AGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCATAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCA	?????BBBDDDDDEDDFFGFGFHII;HICHEI=IFHHEFIHII,IHIH+III+CHIDIHFHH5HHFIIHIHIIFIIIIGIHBHHEIGGHIHIHHGHH:HAIAIIFHH>H@HFDFHF?DGGH?GEGH+EHFEHGEGGDGHGGGCG,6@?CGG?GEEECEG?G,/FEGEGEEF;AGGCGGEGG*:EEEGFGEGGFGEGFGEG
+chr1-135	16	chr1	1007	99	200=	*	0	0	GTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCAC	GGGE:G:FGGGEG6*,E:EGGEGGECGEGE<EGGEFGCGGCGEGGGGGE:=G5EDGEEEEFC>C9DGE-3EFAF@HGGGH,HG@BHHHHCFFDHGHEH3HIIHFIHEIH+EIHIHFIHHHIHIHIHIHIEEI-IAC-FHHHHHH>IHDHFIHIHHDIHHFEHHIIIHHIG>CHIIIFHFGFF;GD-DDDBDBBBB?????
+chr1-144	16	chr1	1008	99	200=	*	0	0	TATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACT	AEGGEGEGFGEG'?E<CCC?DGEGEFGEEGGEG=EGCGEGG@DGGCG?GEGEGGBHD2GGGGDGGGFEHDGHD4HHEGEGHDFGGCFFE<HHHHGHHFH.<HIGIGHHIDFEHFFDIGHGG=HDICEHGIDIIHICHHHIHAIHFIHHIHIFAHIHIHHHIHIIFGHICHIIIIEIIIGGGFFGDDDBDEDDBBA?????
+chr1-141	0	chr1	1009	99	179=1X20=	*	0	0	ATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAAATTTTATTTTTTTTCTCACTT	?A?A?BBBDD.BDDDDFGFFGFHHHCHHAIHHIIDFCIIHFIHIEIIHHIIHHHIIHAHHAII-HIFHIIIIHHIIHHF@HFHIHFI@GEHHIHHHFHBIHAIDHHHIGC=HFGHHHHHBHGGHHHECFEB'E<BIGIHD?,BEFGEEGEFEGGCGGEGEG>EABE?*E;EF?EGGEE/+GFEGEGEC1EFGEGGGC2GG
+chr1-54	0	chr1	1044	99	152=1X47=	*	0	0	CTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTCTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTA	???=ABBBDDD9DDD@GGCFFFHDHFIFIIHHIFHIHIGHHCHDIIFHIGDIHH9IIIEHIIIIIHIHH5IICHIIFCHIHHIICIIIIIHHHGGHI=DF@@CDHIIHCGHGHFF:EEH*DEGHGHGEHGGHGG@EG<GGFFEEGGF?GE?:FGG:FFEEE*E1GFEEFCE,GGEGEGGACGCGEAGGGCE*CG6GAEEG
+chr1-1	16	chr1	1051	99	200=	*	0	0	GAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTAT	GGEG?GEGE6?F:GAFGGE+GGAFFF0?ECE<GGEEFEGGGEEFGEDGGGGEDGFEDGGBFGGE?BGGEDEFGHFHFG?HFDHHGHG?FEHFHHGFHHHIHH@HHHIHFIIHIDFHHHHCIIIFIIIII-IIIGIIHIIHEIHHIIIFIHGHH>HIIIE/EHDCIICIIIHICHHHGFGFFFEGBDDDDDD<B?7A???A
+chr1-119	16	chr1	1063	99	106=1X93=	*	0	0	AGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAAGCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTT	GEEGFCGFGGGGGG6GG1GGGCGFGFEG?GG9GA<4FGG5GGGGG*B:CFCEFDC@EGG:GGIGGDEFHGF.HGGHHGHH<HBFHGFFH+BEDHGDFH3IIIF*HE.IHIIHEH7HHHFHIHIIHIEHIEIIDDIIHCCIIEHICIFIHIIII@IEEIII>HIGHIIIHIFB?IHFFFDGCG@GDDDDDBDD-+BA?A??
+chr1-21	0	chr1	1066	99	200=	*	0	0	ATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTATAACGCCTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCT	?????95BDDBDDDBEGCGGGCICBIIHFHIIHHHFHHIHDFIHIIHH@H?IHIIHHHIIIIIGHEHIHHHIHHGHHIIHEIEHII,HHIFGIIHFCDFHHHHF4HHFHFHHDHFHHFFFEGG@FEEFEFEHDGDDEGFG@EGEAGEGDFEF6GFFAGHFECEGGGGCEE=FGGGGG;GGG*EGGG?6G?F?E*GCGFE?
+chr1-133	16	chr1	1120	99	200=	*	0	0	ACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATT	GF1ECG4:GGABG:GE??FG<E(GD/C:GC)GE:EAGEGGG?EFGGGE8AGEAGGCE':,GGEB=HEDGGFECGGGGHFHIHHHGHDFADHHHFHHGHHFHHHH5IGIHH=AHDIFH+HHGHIIIHDEIIHFIIFDEIIIEIFEHIHFIFHGHHIIHEHIGIIHHHHHIIH;HHHHBHGFGGFGDDDEDDDDBBB=??<?
+chr1-100	16	chr1	1126	99	200=	*	0	0	TTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCG	GEGEGGAGG/8;6EGGG(GF(GEGGAGGEEGEEGBE1AFGGGEEGG=?'GC;EDEGGCB(HGBAI0GFCHEGGGDGHEHHGHHHF>GHEFHHHDFHHHCHEHH?HIIIHIEIHIDHIEIHHIHHFHHHIHIDIHFIFIHIHHIBIIHHIGIDH>IIIBHHHHIIHHGHHG8FHIHHHHGGGGFGBDDBDBDDBBB<A9??
+chr1-7	0	chr1	1131	99	200=	*	0	0	AGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTA	???AA9BADDDBDDDBGF/FEGFIH>IHIHIIIHIHIIIHHHHIIFIIH,IIIFHHFHIIIIIGGIIIIHHFDI?-F>II?IHIIIDEHI.CHIHIHFIGHFHIFHHGHHFHFHGEHGFEGFEEDGEHHDDGFGGGEFCHAEGEEAGAGGEDEGFFEGEEGFGECG7F=CFCGCGGEE0GCECF6GGEEEGCGGF6EGGE
+chr1-43	16	chr1	1135	99	200=	*	0	0	ATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAAC	GGEGEGEGGGEFGEEGGGEGEDGGFACEEG/GEGEGGFEE<GC:FFE9FC;EGGG@GEEEEDFGIHDFFEB0GGGF1EHDFFGHHFHH@DHHFHHHHHHGHHHDHHHIIHHIHFIFFHIHIEII?I7F=IIIIIIIHIGADHIGIFHIIII@DEIIIEFH7CIEHIHHIIFIHIIHHIGGGGFFDDDDABDDB5B?????
+chr1-94	0	chr1	1137	99	99=1X90=1X9=	*	0	0	TGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTGTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGACGTAGAACTT	??A??BBBDDBDDDDDGGFFCGAHHIIIIHI9IIF=DFIIHIHCHCIHIFIIIIFHIAFHHCHHIIHIICIHIHHHHHIFHIDHHG/GHFIIFGFEBHD:HIHHFF<HHHHFHHHEEHGG>FFFGGFGFGGDFEGGGGEEGEGEEFGFE<<EEFG6CEGGGFGEGGCFFGGEGEG?GDGAEGFGCEGEFF*E6GGGE=EG
+chr1-98	0	chr1	1198	99	193=1X6=	*	0	0	TTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTAACTCCA	A?AA<ABB?DDDDDDDFCFCFEIIBHIEFHGFFFEGHI/HHHCIHICI=HIGHHFIIAIFHAHHFHIIFIFHHHHIGHHGIFHHHIDHIIIF7GIGIH63HFHIHIHHFEDDGHHBGHHFHGGGHF*GB5GGEFGGEFGGGGG@GFDBCGEGGGGFEGEFG;EGFGGGEGF?GECEGEE:EGG/GFFC>GGGG)GEGFEE
+chr1-45	16	chr1	1210	99	4=1X195=	*	0	0	TGTTCCTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCA	?EG8(EGGCGECGGGCEGGEFEECEG?*GGE;EECCBGF*?GFFEGEGEF?EGGBFGEFGE1GBEEGCGGGGFGDFGHHIGFDFBHHH=HIEHHHDGHHGH+GIIGHHFHIFGHHHHHIIIHIHFHHCHHIH@+GHDFI-EHIIICHIIHEDEDEFGIDIHIGIIDHDBHHFHIHIHFGGF?GGDB?DDBDD>???<???
+chr1-145	16	chr1	1212	99	200=	*	0	0	TTACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACA	GEEE?GG:CFEGCGGGGC>EE;BGE.GGHGEAEFG:G>GEEGGEGGGGG,=GGCGE2GFGFGEEGGEEGDFHGEGEHGGHEHHFCHHEGHHEIHIHIDIHHEGHFIH6HHIII@HIHDIGIIFHIIIEIIHIIHIFHE@IIIFIHHFEHI=HFHIHEIIIICFIIHFIHEHIGIIHCHCGGGGGDDDDBDDB>BB??=??
+chr1-101	0	chr1	1214	99	159=1X40=	*	0	0	ACTCCAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATCTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAG	?????B>?DED@DDADFCFGGGIHFIEFCHIHFEHHIHIHHCHIIHIEHAIHIHIDHIHHF>,HEG=IIIE5IHIIEIIIIHDHEIIHHDIIEIHGFHCIFFIDHHHIHHHFFHHGHHIFHHEHHGE=;EHEGGEFGEEE2@GEGGGGEG*BGE?GGEG*GGEEFGGEGAGGEEED8CGE?GFGCGFA*DAGGE8E?GG:
+chr1-47	16	chr1	1218	99	67=1X132=	*	0	0	CAGCTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCTGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACC	G1GACFEGGGE;GFDEGEE0GEEEFEEGGGEFGAGEGGEGGGGEGGGGG;GFGGGGGFEE?EGFEDG2GFHGDHFHEHBDEHG6EGGFF.HHHGHGHGDFGIDFHHIDHHHFHDHI?HHIDGIHIGFFIFCEGHHHIHHHIHHHBFHGGHIHGIGIGAEIIHIIII+HIAIHHHFIIAFG8CFFDBDDBD<@BBB??A??
+chr1-22	16	chr1	1221	99	141=1X58=	*	0	0	CTTCTTCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAGAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAAC	GGCCGGE;EGG>GGGGGGEEECGGEGAGGBGF*GGGEEECCGEG;GFGF:FGG?FEGH8ECDGDEFF?EEHEGEFFFF?HDFEGEGFHHHHHHEHFEDDIHH,GIIHHGHHHFHCHIHIIIHFI,HCGHHIFIDIGHIIHH#HHIHIIHHIFHIHIIHHHIIHHHFH7HIII>BIEIHEFG/GGD<DDDD5D@?/?A?<?
+chr1-9	0	chr1	1226	99	193=1X6=	*	0	0	TCGGCATGGTTTTGTCTAACTTTATCGCTGGTTAGTTTCTTCACGCTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAGCCAGAA	A????,?<DDDDDDEDFCGGFFHIIHHIHIGHHIGIIHIIHIHIFGFHHFFIHIHDA7DHIHFCFHIEIHIEEFAHHGIIHIHIHD>HEEGIHH3HIHIHFHIH23HHFHGHG@HAEHHFH@EFGEEG@CEFHEG'EGFGCGFG,EGE,FGGGGECCGGEG=GGEFGG?EEEEGGE<GF?C::GGF8<?GEGG-GEFF0G
+chr1-57	0	chr1	1287	99	200=	*	0	0	AAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATC	??????BBDDDDDDDDGGGGGGFHIEFFHHIFIIIIIHIHHHFBHIHHIFHI,IDIIGFCIIFHHIHHHE)IIFIGFHI-HFIHIIHHFHIBH)HCI=HGFHDIH0F?FI@HDHG;HHHDGFE.FHBEHGG@FG=EGEFCEF=EFFFEFDFHGG*AFAFEGCFE*GGGGE;CGBGCG?FAE6?*GA?EEGGCGEGGGEGG
+chr1-153	16	chr1	1297	99	27=1X172=	*	0	0	AAGTATCGGCTTGTTTACGAATTAAATGGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCG	GGE?E>G8GGGFGCG1CFG@G;E?86E'EAGGGEFECGCE:GGG*E:?GGGG3EG:GCEFFEEE?G:GGGGFGEGHHDFHHG=HHGHBH@FCEHGFHHDHIHIHHHH-GIHIIHGHIHIHIHIIIIDHHIHGIHCH=IGH9FHGHIIFIGIIHIIIHHIGI.FHHHFHIEIIHIHHIHFGGGCGDDDBDD<DBB?A???A
+chr1-67	0	chr1	1315	99	200=	*	0	0	GAATTAAATCGAAGTAGAACTTCATGTGCCTGTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTC	??A??B@9DDDDDBBDFGGGGGHIFHFHIIIGFIHHFIHIHHEFIHHIGGHC>EIFHFIHIHICGGHHCAGHHHIEIF,5HHDHICIHGHIF;HGGIIIIICHHHFHFHHFIEFG=GFGHHF)HHEBGEHGD<DGFFDGGG8G0EE=GGFGFGGEG(EFEEEEEE;GGEGG;GG?C?C?GGGEFEFEEGGGC??FFCFEF
+chr1-27	0	chr1	1346	99	200=	*	0	0	GTAAAACGAAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGA	???9<BBBDDDDDDDBFGGGFGIIIIIHIFIHHIHHHFHHHI7FHIHIHIIIIHHIHHCFHIIAIHHDHIHEIHHHEIFHH5HHHIF?BGGHDEHIHFIFEGG+HHFHGHH7HHGEHHEH*GFCG@)EFHGFEHF9GGG*EE6GEGCGEEGE*0FG@F?FEG7GGGGCFGCGAEGFGGEAE;EE?GACEDGGGGFFEEGG
+chr1-137	16	chr1	1354	99	80=1X119=	*	0	0	AAGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAGGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCG	E?GGE?GGAEEEGGFF6?FECFE*GGGEGAGEGG*GGECGEGGEGE6GGGGCGFEEAFGEEGE:GFFBHG35GFF8G@HH.GHHFHHHDIHFHHHHHICIHHHHIGFHAGIHD?IHHHIIDAIDGHIHAHGDIHHDFIIHFIHHHHIIHICIIEHIHGHIHIHIFHHHIIFIHEIIIIGGAGGCDBDDDDDDB5B?A??5
+chr1-115	0	chr1	1355	99	168=1X31=	*	0	0	AGCGGTAAAAATTTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCAGCTTGTTTACGAATTAAATCGAAGTTACCGT	??A??BBBDADBBBDDFFGFFEHIEHHIIHEHGIHIIIIHIHIIIHIIIIHGIIIIEHICIIHEIIIHIIEHHIHIHFIHIHHHFHHGIHHIFC=DBIHHHHFCHHBDH=GHG?FHGHHGEFFGFFGGFEEDBFEGDEH;EFGGFCFB=FGEGCGEGFG=G=EGGGGG*GGEEGEGGGGGEGE?G?EFGCGFEGEGFEGF
+chr1-17	16	chr1	1367	99	200=	*	0	0	TTTTATTTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAAT	EFCE*GGEGEFEG'GCGGDG:FGGGEC;EEF5FFFGGEGFGGFEEGG*GGG>GEGG4GGEGHFGGAGEGD4EEGFF>EEHHGFHFHDHCHHHFG,FHHGFIHIIHFDHGHHIEHIHIHIFGHIDIHIGIIHDIHIFIHIHHIEHIHIHFHHFHHFHI+IHDIHHIHGHIIFEHIHFFHCGGG;8DBD?DBBDBBB?????
+chr1-82	0	chr1	1373	99	200=	*	0	0	TTTTTTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCC	A????B?@DDD5D<BDGF/GGFHHFF>FHIFHEIHIIIIH?FHHGIFIDFHIHIDHFEIHI@ICIHIIFIEGIHIEG?DHFIFHHHGIHDHHEHHEIGIA.,GIHF=HFDFGHHDHHFGFGHHGEFHBGGDGGFGEGGE7GGFGEGEBAGFGGEE(GE@E6E:GGGCGEFG>ACGEG?F+G:GGE=GAEGFE:GCGEEFF
+chr1-116	0	chr1	1402	99	200=	*	0	0	CTTCGGCACAAGTACCAACCAGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCG	<?AA??B?BBDDDDDDGFFFFFHEIHFIBFIEHI@IIHDIIIHHHFBGHHHII@=HHFFHH5HIHIHHFIHIHCH5FHHIIIHIIHFHIHIHHHEDGIHHHCHFE?FGHHEHGHFGGGHGHHHFG=GHHDFGEHGF*@GGG;DCGFGF=GG:EGFGG9GGEDEFCE.CEGG=G:EGGGEGFEGGBCG<EGGFGE:?G?E?
+chr1-132	16	chr1	1415	99	9=1X190=	*	0	0	ACCAACCAGTACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTG	G8CEG8CGE;EEEGCEF?EGD?CGGGCG?GGE;AC@G=EGGGAGB@8GGCGEFGGGFG0GFF<IEAGGEGGHG*HGEHHGH>GGDDHHBGHHDIEHHAIHCHIAH/HHFI)AIHIH>HIHHIHHEEHHIFH=AIH?IHIEIHHHHHIH8>FIIFIIFHIIEHH0EIHIIEIIF8IIHIFFFGGG?DDBDBDABBB????5
+chr1-44	0	chr1	1422	99	105=1X94=	*	0	0	AGAACGTGAAAAAGCGTCCTGCGTGTAGCGTTTATGTTGGTTTCATGGTTTTGTCTAACTTTATCGCTTTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTCGTTTACGAATTAAATCGAAGTTACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGTTAT	??A9?BB?DDADD?DBGAEGGGIHIIIHIHIIIIIHDDHIIHGHIIIG=IIIHIFFIDIIHHHHHEIHGHH5DHHIHG=HFIHIIH@IIIHHH7IHEIEHHHHHB'FHFGEGFHFEEF.HBGFFGFDGFFEGHGEIGGGH>GEEFGGG@GGDE@GGFGGGEGGCG?BEGGEGGGE?F8GGGFG9GGGCFG?GGGGEGAGG
diff -r 000000000000 -r b6794f4cb1c6 test-data/input_2.bam
Binary file test-data/input_2.bam has changed
diff -r 000000000000 -r b6794f4cb1c6 test-data/output_1.psl
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output_1.psl	Mon Dec 12 14:42:58 2022 +0000
@@ -0,0 +1,50 @@
+197	6	0	0	0	0	0	0	+	chr1-106	200	0	200	chr1	1626	3	203	4	125,8,52,12,	0,126,135,188,	3,129,138,191,
+199	2	0	0	0	0	0	0	+	chr1-99	200	0	200	chr1	1626	13	213	2	101,98,	0,102,	13,115,
+200	0	0	0	0	0	0	0	-	chr1-68	200	0	200	chr1	1626	13	213	1	200,	0,	13,
+200	0	0	0	0	0	0	0	-	chr1-3	200	0	200	chr1	1626	16	216	1	200,	0,	16,
+200	0	0	0	0	0	0	0	+	chr1-152	200	0	200	chr1	1626	23	223	1	200,	0,	23,
+199	2	0	0	0	0	0	0	+	chr1-74	200	0	200	chr1	1626	42	242	2	156,43,	0,157,	42,199,
+199	2	0	0	0	0	0	0	+	chr1-160	200	0	200	chr1	1626	47	247	2	183,16,	0,184,	47,231,
+199	2	0	0	0	0	0	0	-	chr1-117	200	0	200	chr1	1626	63	263	2	24,175,	0,25,	63,88,
+199	2	0	0	0	0	0	0	+	chr1-37	200	0	200	chr1	1626	69	269	2	176,23,	0,177,	69,246,
+200	0	0	0	0	0	0	0	-	chr1-121	200	0	200	chr1	1626	78	278	1	200,	0,	78,
+200	0	0	0	0	0	0	0	-	chr1-89	200	0	200	chr1	1626	108	308	1	200,	0,	108,
+200	0	0	0	0	0	0	0	-	chr1-14	200	0	200	chr1	1626	110	310	1	200,	0,	110,
+200	0	0	0	0	0	0	0	-	chr1-61	200	0	200	chr1	1626	117	317	1	200,	0,	117,
+199	2	0	0	0	0	0	0	-	chr1-85	200	0	200	chr1	1626	124	324	2	6,193,	0,7,	124,131,
+199	2	0	0	0	0	0	0	+	chr1-148	200	0	200	chr1	1626	134	334	2	41,158,	0,42,	134,176,
+200	0	0	0	0	0	0	0	-	chr1-102	200	0	200	chr1	1626	135	335	1	200,	0,	135,
+200	0	0	0	0	0	0	0	+	chr1-29	200	0	200	chr1	1626	136	336	1	200,	0,	136,
+199	2	0	0	0	0	0	0	-	chr1-92	200	0	200	chr1	1626	142	342	2	65,134,	0,66,	142,208,
+199	2	0	0	0	0	0	0	+	chr1-139	200	0	200	chr1	1626	148	348	2	117,82,	0,118,	148,266,
+198	4	0	0	0	0	0	0	+	chr1-84	200	0	200	chr1	1626	163	363	3	57,100,41,	0,58,159,	163,221,322,
+200	0	0	0	0	0	0	0	+	chr1-125	200	0	200	chr1	1626	169	369	1	200,	0,	169,
+199	2	0	0	0	0	0	0	-	chr1-11	200	0	200	chr1	1626	198	398	2	112,87,	0,113,	198,311,
+198	4	0	0	0	0	0	0	+	chr1-53	200	0	200	chr1	1626	210	410	3	134,1,63,	0,135,137,	210,345,347,
+200	0	0	0	0	0	0	0	+	chr1-105	200	0	200	chr1	1626	225	425	1	200,	0,	225,
+199	2	0	0	0	0	0	0	-	chr1-127	200	0	200	chr1	1626	244	444	2	97,102,	0,98,	244,342,
+199	2	0	0	0	0	0	0	+	chr1-147	200	0	200	chr1	1626	269	469	2	64,135,	0,65,	269,334,
+200	0	0	0	0	0	0	0	+	chr1-83	200	0	200	chr1	1626	270	470	1	200,	0,	270,
+199	2	0	0	0	0	0	0	+	chr1-36	200	0	200	chr1	1626	271	471	2	123,76,	0,124,	271,395,
+200	0	0	0	0	0	0	0	-	chr1-55	200	0	200	chr1	1626	273	473	1	200,	0,	273,
+200	0	0	0	0	0	0	0	+	chr1-136	200	0	200	chr1	1626	279	479	1	200,	0,	279,
+200	0	0	0	0	0	0	0	+	chr1-64	200	0	200	chr1	1626	280	480	1	200,	0,	280,
+200	0	0	0	0	0	0	0	-	chr1-130	200	0	200	chr1	1626	288	488	1	200,	0,	288,
+200	0	0	0	0	0	0	0	+	chr1-78	200	0	200	chr1	1626	302	502	1	200,	0,	302,
+199	2	0	0	0	0	0	0	-	chr1-111	200	0	200	chr1	1626	314	514	2	130,69,	0,131,	314,445,
+199	2	0	0	0	0	0	0	-	chr1-75	200	0	200	chr1	1626	317	517	2	36,163,	0,37,	317,354,
+198	4	0	0	0	0	0	0	+	chr1-103	200	0	200	chr1	1626	323	523	3	101,48,49,	0,102,151,	323,425,474,
+200	0	0	0	0	0	0	0	-	chr1-69	200	0	200	chr1	1626	334	534	1	200,	0,	334,
+200	0	0	0	0	0	0	0	-	chr1-146	200	0	200	chr1	1626	350	550	1	200,	0,	350,
+200	0	0	0	0	0	0	0	-	chr1-42	200	0	200	chr1	1626	352	552	1	200,	0,	352,
+200	0	0	0	0	0	0	0	+	chr1-66	200	0	200	chr1	1626	364	564	1	200,	0,	364,
+200	0	0	0	0	0	0	0	+	chr1-81	200	0	200	chr1	1626	365	565	1	200,	0,	365,
+199	2	0	0	0	0	0	0	-	chr1-120	200	0	200	chr1	1626	373	573	2	89,110,	0,90,	373,463,
+200	0	0	0	0	0	0	0	+	chr1-143	200	0	200	chr1	1626	378	578	1	200,	0,	378,
+200	0	0	0	0	0	0	0	-	chr1-58	200	0	200	chr1	1626	382	582	1	200,	0,	382,
+200	0	0	0	0	0	0	0	+	chr1-48	200	0	200	chr1	1626	384	584	1	200,	0,	384,
+199	2	0	0	0	0	0	0	+	chr1-86	200	0	200	chr1	1626	385	585	2	162,37,	0,163,	385,548,
+199	2	0	0	0	0	0	0	-	chr1-34	200	0	200	chr1	1626	391	591	2	49,150,	0,50,	391,441,
+199	2	0	0	0	0	0	0	+	chr1-15	200	0	199	chr1	1626	394	593	1	199,	0,	394,
+199	2	0	0	0	0	0	0	+	chr1-8	200	0	200	chr1	1626	395	595	2	99,100,	0,100,	395,495,
+199	2	0	0	0	0	0	0	-	chr1-140	200	0	200	chr1	1626	398	598	2	96,103,	0,97,	398,495,
diff -r 000000000000 -r b6794f4cb1c6 test-data/output_2.psl
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output_2.psl	Mon Dec 12 14:42:58 2022 +0000
@@ -0,0 +1,50 @@
+180	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1101:6911:8255	251	71	251	gi|251831106|ref|NC_012920.1|	16569	0	180	1	180,	71,	0,
+241	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1101:14518:9998	251	10	251	gi|251831106|ref|NC_012920.1|	16569	0	241	1	241,	10,	0,
+171	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1101:18422:19051	251	80	251	gi|251831106|ref|NC_012920.1|	16569	0	171	1	171,	80,	0,
+138	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1101:25545:21098	251	113	251	gi|251831106|ref|NC_012920.1|	16569	0	138	1	138,	113,	0,
+173	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1101:5446:12248	251	78	251	gi|251831106|ref|NC_012920.1|	16569	0	173	1	173,	78,	0,
+171	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1101:5861:6452	251	80	251	gi|251831106|ref|NC_012920.1|	16569	0	171	1	171,	80,	0,
+130	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1102:10403:6021	251	121	251	gi|251831106|ref|NC_012920.1|	16569	0	130	1	130,	121,	0,
+213	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1102:10677:23253	251	22	235	gi|251831106|ref|NC_012920.1|	16569	0	213	1	213,	22,	0,
+179	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1102:13809:1733	251	50	229	gi|251831106|ref|NC_012920.1|	16569	0	179	1	179,	50,	0,
+138	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1102:17584:10050	251	52	190	gi|251831106|ref|NC_012920.1|	16569	0	138	1	138,	52,	0,
+146	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1102:18842:24844	251	105	251	gi|251831106|ref|NC_012920.1|	16569	0	146	1	146,	105,	0,
+213	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1102:21788:11027	251	35	248	gi|251831106|ref|NC_012920.1|	16569	0	213	1	213,	35,	0,
+146	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1102:5728:8777	251	105	251	gi|251831106|ref|NC_012920.1|	16569	0	146	1	146,	105,	0,
+171	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1102:5983:21093	251	80	251	gi|251831106|ref|NC_012920.1|	16569	0	171	1	171,	80,	0,
+132	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1102:7765:18353	251	119	251	gi|251831106|ref|NC_012920.1|	16569	0	132	1	132,	119,	0,
+171	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1103:10405:17879	251	80	251	gi|251831106|ref|NC_012920.1|	16569	0	171	1	171,	80,	0,
+155	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1103:13493:8205	251	96	251	gi|251831106|ref|NC_012920.1|	16569	0	155	1	155,	96,	0,
+156	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1103:14060:21273	251	80	236	gi|251831106|ref|NC_012920.1|	16569	0	156	1	156,	80,	0,
+138	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1103:14528:12993	251	113	251	gi|251831106|ref|NC_012920.1|	16569	0	138	1	138,	113,	0,
+161	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1103:17657:20856	251	90	251	gi|251831106|ref|NC_012920.1|	16569	0	161	1	161,	90,	0,
+134	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1103:23099:3794	251	59	193	gi|251831106|ref|NC_012920.1|	16569	0	134	1	134,	59,	0,
+120	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1103:25465:20010	251	45	165	gi|251831106|ref|NC_012920.1|	16569	0	120	1	120,	45,	0,
+184	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1103:25519:6301	251	18	202	gi|251831106|ref|NC_012920.1|	16569	0	184	1	184,	18,	0,
+143	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1103:6074:6549	251	108	251	gi|251831106|ref|NC_012920.1|	16569	0	143	1	143,	108,	0,
+171	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1104:11572:8264	251	80	251	gi|251831106|ref|NC_012920.1|	16569	0	171	1	171,	80,	0,
+127	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1104:11928:24197	251	124	251	gi|251831106|ref|NC_012920.1|	16569	0	127	1	127,	124,	0,
+146	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1104:12288:20635	251	105	251	gi|251831106|ref|NC_012920.1|	16569	0	146	1	146,	105,	0,
+132	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1104:13832:4398	251	7	139	gi|251831106|ref|NC_012920.1|	16569	0	132	1	132,	7,	0,
+176	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1104:23670:4161	251	75	251	gi|251831106|ref|NC_012920.1|	16569	0	176	1	176,	75,	0,
+157	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1104:24927:22253	251	94	251	gi|251831106|ref|NC_012920.1|	16569	0	157	1	157,	94,	0,
+187	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1104:4705:7727	251	64	251	gi|251831106|ref|NC_012920.1|	16569	0	187	1	187,	64,	0,
+137	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1104:7756:4776	251	114	251	gi|251831106|ref|NC_012920.1|	16569	0	137	1	137,	114,	0,
+144	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:11310:21761	251	104	248	gi|251831106|ref|NC_012920.1|	16569	0	144	1	144,	104,	0,
+131	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:11578:14676	251	120	251	gi|251831106|ref|NC_012920.1|	16569	0	131	1	131,	120,	0,
+184	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:13575:19255	251	67	251	gi|251831106|ref|NC_012920.1|	16569	0	184	1	184,	67,	0,
+231	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:15502:11453	251	0	231	gi|251831106|ref|NC_012920.1|	16569	0	231	1	231,	0,	0,
+187	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:16787:9771	251	64	251	gi|251831106|ref|NC_012920.1|	16569	0	187	1	187,	64,	0,
+173	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:17564:15723	251	78	251	gi|251831106|ref|NC_012920.1|	16569	0	173	1	173,	78,	0,
+156	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:18108:12091	251	80	236	gi|251831106|ref|NC_012920.1|	16569	0	156	1	156,	80,	0,
+181	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:18331:16683	251	70	251	gi|251831106|ref|NC_012920.1|	16569	0	181	1	181,	70,	0,
+151	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:20577:18421	251	100	251	gi|251831106|ref|NC_012920.1|	16569	0	151	1	151,	100,	0,
+156	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:21099:2895	251	95	251	gi|251831106|ref|NC_012920.1|	16569	0	156	1	156,	95,	0,
+152	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:26469:19245	251	99	251	gi|251831106|ref|NC_012920.1|	16569	0	152	1	152,	99,	0,
+206	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1105:7169:17145	251	45	251	gi|251831106|ref|NC_012920.1|	16569	0	206	1	206,	45,	0,
+161	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1106:15481:16176	251	90	251	gi|251831106|ref|NC_012920.1|	16569	0	161	1	161,	90,	0,
+140	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1106:17389:18671	251	111	251	gi|251831106|ref|NC_012920.1|	16569	0	140	1	140,	111,	0,
+130	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1106:22927:3863	251	80	210	gi|251831106|ref|NC_012920.1|	16569	0	130	1	130,	80,	0,
+156	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1106:23625:4236	251	95	251	gi|251831106|ref|NC_012920.1|	16569	0	156	1	156,	95,	0,
+184	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1106:26031:14826	251	0	184	gi|251831106|ref|NC_012920.1|	16569	0	184	1	184,	0,	0,
+132	0	0	0	0	0	0	0	+	M01368:8:000000000-A3GHV:1:1106:27607:15990	251	24	156	gi|251831106|ref|NC_012920.1|	16569	0	132	1	132,	24,	0,