Mercurial > repos > greg > bcftools_sort

comparison test-data/unsorted.vcf @ 0:1d4c51dcbbbe draft

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author greg
date Wed, 19 Dec 2018 08:58:27 -0500
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-1:000000000000 0:1d4c51dcbbbe
1 ##fileformat=VCFv4.0
2 ##INFO=<ID=XX,Number=1,Type=Integer,Description="Test">
3 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
4 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
5 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
7 ##FILTER=<ID=Fail,Description="Fail">
8 ##contig=<ID=1,length=62435964>
9 ##contig=<ID=2,length=62435964>
10 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A
11 2 140 . A G 727 PASS DP=30 GT:GQ:DP 0/1:150:30
12 2 160 . TAAAA TA,TC,T 246 PASS DP=10 GT:GQ:DP 0/2:12:10
13 1 110 . C T,G 1792 Fail XX=11;DP=32 GT:GQ:DP 0/1:245:32
14 1 130 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0/1:212:22
15 1 130 . G T 1016 PASS DP=22 GT:GQ:DP 0/1:212:22