Mercurial > repos > greg > bcftools_sort

view test-data/unsorted.vcf @ 0:1d4c51dcbbbe draft

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author greg
date Wed, 19 Dec 2018 08:58:27 -0500
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##fileformat=VCFv4.0
##INFO=<ID=XX,Number=1,Type=Integer,Description="Test">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FILTER=<ID=Fail,Description="Fail">
##contig=<ID=1,length=62435964>
##contig=<ID=2,length=62435964>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A
2	140	.	A	G	727	PASS	DP=30	GT:GQ:DP	0/1:150:30
2	160	.	TAAAA	TA,TC,T	246	PASS	DP=10	GT:GQ:DP	0/2:12:10
1	110	.	C	T,G	1792	Fail	XX=11;DP=32	GT:GQ:DP	0/1:245:32
1	130	.	GAA	GG	1016	PASS	DP=22	GT:GQ:DP	0/1:212:22
1	130	.	G	T	1016	PASS	DP=22	GT:GQ:DP	0/1:212:22