# HG changeset patch # User greg # Date 1679427145 0 # Node ID 2774bdf30122af04093bc44cb1de6bac958ca3b6 # Parent 30b17a17c1aac323912775c8acea97bab48ec447 Uploaded diff -r 30b17a17c1aa -r 2774bdf30122 call_amr_mutations.xml --- a/call_amr_mutations.xml Tue Mar 21 19:26:55 2023 +0000 +++ b/call_amr_mutations.xml Tue Mar 21 19:32:25 2023 +0000 @@ -5,10 +5,7 @@ </macros> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ -## NOTE: This tool provides the functionality of the PIMA filter_varsacn() -## function here https://github.com/appliedbinf/pima_md/blob/main/pima.py#L3012 - -python '$__tool_directory__/filter_varscan.py' +python '$__tool_directory__/call_amr_mutations.py' --varscan_raw '$varscan_raw' --output '$output' ]]></command>