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1 /home/galaxies/lrn/galaxy/database/files/000/dataset_17.dat /home/galaxies/lrn/galaxy/database/files/002/dataset_2176.dat
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2 NUCMER
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3
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4 [REF] [QRY]
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5 [Sequences]
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6 TotalSeqs 34305 6
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7 AlignedSeqs 697(2.0318%) 3(50.0000%)
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8 UnalignedSeqs 33608(97.9682%) 3(50.0000%)
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9
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10 [Bases]
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11 TotalBases 2077959494 11421968
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12 AlignedBases 3025775(0.1456%) 228614(2.0015%)
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13 UnalignedBases 2074933719(99.8544%) 11193354(97.9985%)
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14
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15 [Alignments]
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16 1-to-1 78 78
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17 TotalLength 187128 187163
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18 AvgLength 2399.0769 2399.5256
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19 AvgIdentity 94.7915 94.7915
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20
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21 M-to-M 3246 3246
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22 TotalLength 4521754 4532531
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23 AvgLength 1393.0234 1396.3435
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24 AvgIdentity 90.0308 90.0308
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25
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26 [Feature Estimates]
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27 Breakpoints 6288 6480
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28 Relocations 10 2
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29 Translocations 1 67
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30 Inversions 2 0
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31
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32 Insertions 5794 200
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33 InsertionSum 41691366 11221715
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34 InsertionAvg 7195.6103 56108.5750
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35
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36 TandemIns 0 0
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37 TandemInsSum 0 0
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38 TandemInsAvg 0.0000 0.0000
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39
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40 [SNPs]
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41 TotalSNPs 6547 6547
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42 TG 351(5.3612%) 323(4.9336%)
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43 TC 967(14.7701%) 933(14.2508%)
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44 TA 453(6.9192%) 435(6.6443%)
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45 GC 232(3.5436%) 202(3.0854%)
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46 GA 989(15.1062%) 986(15.0603%)
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47 GT 323(4.9336%) 351(5.3612%)
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48 AG 986(15.0603%) 989(15.1062%)
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49 AC 352(5.3765%) 324(4.9488%)
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50 AT 435(6.6443%) 453(6.9192%)
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51 CG 202(3.0854%) 232(3.5436%)
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52 CA 324(4.9488%) 352(5.3765%)
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53 CT 933(14.2508%) 967(14.7701%)
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54
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55 TotalGSNPs 366 366
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56 TC 75(20.4918%) 59(16.1202%)
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57 TA 15(4.0984%) 15(4.0984%)
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58 TG 12(3.2787%) 13(3.5519%)
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59 AC 13(3.5519%) 12(3.2787%)
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60 AG 71(19.3989%) 73(19.9454%)
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61 AT 15(4.0984%) 15(4.0984%)
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62 CT 59(16.1202%) 75(20.4918%)
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63 CG 4(1.0929%) 4(1.0929%)
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64 CA 12(3.2787%) 13(3.5519%)
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65 GT 13(3.5519%) 12(3.2787%)
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66 GC 4(1.0929%) 4(1.0929%)
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67 GA 73(19.9454%) 71(19.3989%)
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68
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69 TotalIndels 874 874
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70 T. 133(15.2174%) 156(17.8490%)
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71 G. 60(6.8650%) 89(10.1831%)
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72 A. 119(13.6156%) 138(15.7895%)
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73 C. 80(9.1533%) 99(11.3272%)
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74 .A 138(15.7895%) 119(13.6156%)
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75 .C 99(11.3272%) 80(9.1533%)
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76 .G 89(10.1831%) 60(6.8650%)
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77 .T 156(17.8490%) 133(15.2174%)
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78
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79 TotalGIndels 34 34
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80 T. 1(2.9412%) 8(23.5294%)
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81 A. 0(0.0000%) 15(44.1176%)
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82 C. 0(0.0000%) 7(20.5882%)
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83 G. 0(0.0000%) 3(8.8235%)
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84 .G 3(8.8235%) 0(0.0000%)
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85 .A 15(44.1176%) 0(0.0000%)
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86 .C 7(20.5882%) 0(0.0000%)
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87 .T 8(23.5294%) 1(2.9412%)
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