Mercurial > repos > greg > call_insertions
view test-data/dnadiff_report.txt @ 0:5626dc2d0ef2 draft default tip
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| author | greg |
|---|---|
| date | Tue, 07 Feb 2023 21:43:42 +0000 |
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/home/galaxies/lrn/galaxy/database/files/000/dataset_17.dat /home/galaxies/lrn/galaxy/database/files/002/dataset_2176.dat NUCMER [REF] [QRY] [Sequences] TotalSeqs 34305 6 AlignedSeqs 697(2.0318%) 3(50.0000%) UnalignedSeqs 33608(97.9682%) 3(50.0000%) [Bases] TotalBases 2077959494 11421968 AlignedBases 3025775(0.1456%) 228614(2.0015%) UnalignedBases 2074933719(99.8544%) 11193354(97.9985%) [Alignments] 1-to-1 78 78 TotalLength 187128 187163 AvgLength 2399.0769 2399.5256 AvgIdentity 94.7915 94.7915 M-to-M 3246 3246 TotalLength 4521754 4532531 AvgLength 1393.0234 1396.3435 AvgIdentity 90.0308 90.0308 [Feature Estimates] Breakpoints 6288 6480 Relocations 10 2 Translocations 1 67 Inversions 2 0 Insertions 5794 200 InsertionSum 41691366 11221715 InsertionAvg 7195.6103 56108.5750 TandemIns 0 0 TandemInsSum 0 0 TandemInsAvg 0.0000 0.0000 [SNPs] TotalSNPs 6547 6547 TG 351(5.3612%) 323(4.9336%) TC 967(14.7701%) 933(14.2508%) TA 453(6.9192%) 435(6.6443%) GC 232(3.5436%) 202(3.0854%) GA 989(15.1062%) 986(15.0603%) GT 323(4.9336%) 351(5.3612%) AG 986(15.0603%) 989(15.1062%) AC 352(5.3765%) 324(4.9488%) AT 435(6.6443%) 453(6.9192%) CG 202(3.0854%) 232(3.5436%) CA 324(4.9488%) 352(5.3765%) CT 933(14.2508%) 967(14.7701%) TotalGSNPs 366 366 TC 75(20.4918%) 59(16.1202%) TA 15(4.0984%) 15(4.0984%) TG 12(3.2787%) 13(3.5519%) AC 13(3.5519%) 12(3.2787%) AG 71(19.3989%) 73(19.9454%) AT 15(4.0984%) 15(4.0984%) CT 59(16.1202%) 75(20.4918%) CG 4(1.0929%) 4(1.0929%) CA 12(3.2787%) 13(3.5519%) GT 13(3.5519%) 12(3.2787%) GC 4(1.0929%) 4(1.0929%) GA 73(19.9454%) 71(19.3989%) TotalIndels 874 874 T. 133(15.2174%) 156(17.8490%) G. 60(6.8650%) 89(10.1831%) A. 119(13.6156%) 138(15.7895%) C. 80(9.1533%) 99(11.3272%) .A 138(15.7895%) 119(13.6156%) .C 99(11.3272%) 80(9.1533%) .G 89(10.1831%) 60(6.8650%) .T 156(17.8490%) 133(15.2174%) TotalGIndels 34 34 T. 1(2.9412%) 8(23.5294%) A. 0(0.0000%) 15(44.1176%) C. 0(0.0000%) 7(20.5882%) G. 0(0.0000%) 3(8.8235%) .G 3(8.8235%) 0(0.0000%) .A 15(44.1176%) 0(0.0000%) .C 7(20.5882%) 0(0.0000%) .T 8(23.5294%) 1(2.9412%)