# HG changeset patch
# User greg
# Date 1700662259 0
# Node ID 991fbae39ee65f77187f036f26914f33ba023a84
# Parent  9ab66ea409ff185d65cbf152eeae4f13968ffb21
Uploaded

diff -r 9ab66ea409ff -r 991fbae39ee6 .shed.yml
--- a/.shed.yml	Tue Nov 21 22:08:55 2023 +0000
+++ b/.shed.yml	Wed Nov 22 14:10:59 2023 +0000
@@ -1,7 +1,7 @@
 name: cfsan_snp_pipeline_call_sites
 owner: greg
-description: Wrapper for picard MarkDuplicate, samtools mpileup and varscan mpileup2snp
-long_description: Wrapper for picard MarkDuplicate, samtools mpileup and varscan mpileup2snp
+description: Find the sites with high-confidence SNPs in a sample.
+long_description: Find the sites with high-confidence SNPs in a sample.
 categories: 
 - Metagenomics
 remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/snp_pipeline/cfsan_snp_pipeline_call_sites
diff -r 9ab66ea409ff -r 991fbae39ee6 cfsan_snp_pipeline_call_sites.xml
--- a/cfsan_snp_pipeline_call_sites.xml	Tue Nov 21 22:08:55 2023 +0000
+++ b/cfsan_snp_pipeline_call_sites.xml	Wed Nov 22 14:10:59 2023 +0000
@@ -36,7 +36,13 @@
         </test>
     </tests>
     <help><![CDATA[
-        <a href="http://snp-pipeline.readthedocs.io/en/latest/index.html">http://snp-pipeline.readthedocs.io/en/latest/index.html</a>
+**What it does**
+
+Finds the sites with high-confidence SNPs in a sample.
+
+**More information**
+
+CFSAN SNP Pipeline `call consensus documentation <https://snp-pipeline.readthedocs.io/en/latest/cmd_ref.html#call-consensus>`_
     ]]></help>
     <expand macro="citations"/>
 </tool>