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1 <macros>
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2 <token name="@TOOL_VERSION@">2.2.1</token>
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3 <token name="@VERSION_SUFFIX@">0</token>
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4 <token name="@PROFILE@">21.01</token>
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5 <xml name="requirements">
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6 <requirements>
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7 <requirement type="package" version="2.5.2">bowtie2</requirement>
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8 <requirement type="package" version="@TOOL_VERSION@">snp-pipeline</requirement>
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9 </requirements>
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10 </xml>
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11 <xml name="reference_cond">
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12 <conditional name="reference_cond">
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13 <param name="reference_source" type="select" label="Choose the source for the reference genome">
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14 <option value="history" selected="true">from history</option>
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15 <option value="cached">locally cached</option>
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16 </param>
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17 <when value="cached">
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18 <param name="reference" type="select" label="Select reference">
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19 <options from_data_table="all_fasta">
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20 <filter type="sort_by" column="2"/>
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21 <validator type="no_options" message="No assemblies are available for the selected input dataset"/>
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22 </options>
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23 </param>
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24 </when>
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25 <when value="history">
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26 <param name="reference" type="data" format="fasta" label="FASTA Reference from your history"/>
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27 </when>
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28 </conditional>
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29 </xml>
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30 <xml name="citations">
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31 <citations>
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32 <citation type="doi">10.7717/peerj-cs.20</citation>
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33 </citations>
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34 </xml>
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35 </macros>
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