# HG changeset patch
# User greg
# Date 1697211448 0
# Node ID 1013b32b325a5f78da42fdfda915970dc03d1622
# Parent  201984e0cab25e2be2de9cfaed3ee523c878a37b
Uploaded

diff -r 201984e0cab2 -r 1013b32b325a cfsan_snp_pipeline_merge_sites.xml
--- a/cfsan_snp_pipeline_merge_sites.xml	Fri Oct 13 14:20:19 2023 +0000
+++ b/cfsan_snp_pipeline_merge_sites.xml	Fri Oct 13 15:37:28 2023 +0000
@@ -26,6 +26,10 @@
     </outputs>
     <tests>
         <test>
+            <param name="input_vcf" value="input1.vcf"/>
+            <output name="output" value="output.tabular"/>
+        </test>
+        <test>
             <param name="input_type" value="collection"/>
             <param name="input_vcf_collection">
                 <collection type="list">
@@ -35,7 +39,7 @@
                     <element name="input4" value="input4.vcf" ftype="vcf"/>
                 </collection>
             </param>
-            <output name="output" value="output.tabular"/>
+            <output name="output" value="output2.tabular"/>
         </test>
     </tests>
     <help><![CDATA[
diff -r 201984e0cab2 -r 1013b32b325a test-data/output.tabular
--- a/test-data/output.tabular	Fri Oct 13 14:20:19 2023 +0000
+++ b/test-data/output.tabular	Fri Oct 13 15:37:28 2023 +0000
@@ -1,165 +1,46 @@
-gi|9626243|ref|NC_001416.1|	403	1	input1
-gi|9626243|ref|NC_001416.1|	550	1	input4
-gi|9626243|ref|NC_001416.1|	586	1	input4
-gi|9626243|ref|NC_001416.1|	753	1	input1
-gi|9626243|ref|NC_001416.1|	1019	1	input4
-gi|9626243|ref|NC_001416.1|	1079	1	input1
-gi|9626243|ref|NC_001416.1|	1540	1	input1
-gi|9626243|ref|NC_001416.1|	1620	1	input4
-gi|9626243|ref|NC_001416.1|	1650	1	input4
-gi|9626243|ref|NC_001416.1|	1788	1	input4
-gi|9626243|ref|NC_001416.1|	1804	1	input1
-gi|9626243|ref|NC_001416.1|	2123	1	input1
-gi|9626243|ref|NC_001416.1|	2439	1	input3
-gi|9626243|ref|NC_001416.1|	2452	1	input4
-gi|9626243|ref|NC_001416.1|	2599	1	input2
-gi|9626243|ref|NC_001416.1|	3063	1	input4
-gi|9626243|ref|NC_001416.1|	3351	1	input1
-gi|9626243|ref|NC_001416.1|	3648	1	input3
-gi|9626243|ref|NC_001416.1|	3656	1	input1
-gi|9626243|ref|NC_001416.1|	3678	1	input2
-gi|9626243|ref|NC_001416.1|	4977	1	input1
-gi|9626243|ref|NC_001416.1|	5142	1	input2
-gi|9626243|ref|NC_001416.1|	5336	1	input2
-gi|9626243|ref|NC_001416.1|	5462	1	input3
-gi|9626243|ref|NC_001416.1|	5482	1	input1
-gi|9626243|ref|NC_001416.1|	5516	1	input1
-gi|9626243|ref|NC_001416.1|	5800	1	input1
-gi|9626243|ref|NC_001416.1|	5818	1	input4
-gi|9626243|ref|NC_001416.1|	5994	1	input2
-gi|9626243|ref|NC_001416.1|	6296	1	input4
-gi|9626243|ref|NC_001416.1|	6535	1	input2
-gi|9626243|ref|NC_001416.1|	6824	1	input1
-gi|9626243|ref|NC_001416.1|	7424	1	input2
-gi|9626243|ref|NC_001416.1|	7668	1	input3
-gi|9626243|ref|NC_001416.1|	7897	1	input1
-gi|9626243|ref|NC_001416.1|	8420	1	input3
-gi|9626243|ref|NC_001416.1|	8938	1	input4
-gi|9626243|ref|NC_001416.1|	9175	1	input1
-gi|9626243|ref|NC_001416.1|	9234	1	input4
-gi|9626243|ref|NC_001416.1|	9919	1	input3
-gi|9626243|ref|NC_001416.1|	10127	1	input2
-gi|9626243|ref|NC_001416.1|	10264	1	input3
-gi|9626243|ref|NC_001416.1|	10421	1	input4
-gi|9626243|ref|NC_001416.1|	10568	1	input4
-gi|9626243|ref|NC_001416.1|	11066	1	input3
-gi|9626243|ref|NC_001416.1|	11128	1	input4
-gi|9626243|ref|NC_001416.1|	11782	1	input2
-gi|9626243|ref|NC_001416.1|	12070	1	input3
-gi|9626243|ref|NC_001416.1|	12717	1	input1
-gi|9626243|ref|NC_001416.1|	12795	1	input1
-gi|9626243|ref|NC_001416.1|	12876	1	input4
-gi|9626243|ref|NC_001416.1|	12959	1	input1
-gi|9626243|ref|NC_001416.1|	12970	1	input3
-gi|9626243|ref|NC_001416.1|	13107	1	input3
-gi|9626243|ref|NC_001416.1|	13264	1	input2
-gi|9626243|ref|NC_001416.1|	13542	1	input2
-gi|9626243|ref|NC_001416.1|	13647	1	input4
-gi|9626243|ref|NC_001416.1|	13952	1	input2
-gi|9626243|ref|NC_001416.1|	13971	1	input3
-gi|9626243|ref|NC_001416.1|	15384	1	input3
-gi|9626243|ref|NC_001416.1|	15715	1	input2
-gi|9626243|ref|NC_001416.1|	15967	1	input2
-gi|9626243|ref|NC_001416.1|	16070	1	input3
-gi|9626243|ref|NC_001416.1|	16654	1	input1
-gi|9626243|ref|NC_001416.1|	16715	1	input1
-gi|9626243|ref|NC_001416.1|	17142	1	input2
-gi|9626243|ref|NC_001416.1|	17311	1	input2
-gi|9626243|ref|NC_001416.1|	17854	1	input2
-gi|9626243|ref|NC_001416.1|	18151	1	input3
-gi|9626243|ref|NC_001416.1|	18188	1	input4
-gi|9626243|ref|NC_001416.1|	18210	1	input4
-gi|9626243|ref|NC_001416.1|	18420	1	input2
-gi|9626243|ref|NC_001416.1|	18598	1	input1
-gi|9626243|ref|NC_001416.1|	18652	1	input2
-gi|9626243|ref|NC_001416.1|	18989	1	input3
-gi|9626243|ref|NC_001416.1|	19208	1	input2
-gi|9626243|ref|NC_001416.1|	19448	1	input3
-gi|9626243|ref|NC_001416.1|	19469	1	input1
-gi|9626243|ref|NC_001416.1|	20079	1	input3
-gi|9626243|ref|NC_001416.1|	20099	1	input1
-gi|9626243|ref|NC_001416.1|	20289	1	input3
-gi|9626243|ref|NC_001416.1|	20367	1	input2
-gi|9626243|ref|NC_001416.1|	21110	1	input1
-gi|9626243|ref|NC_001416.1|	21320	1	input2
-gi|9626243|ref|NC_001416.1|	21653	1	input3
-gi|9626243|ref|NC_001416.1|	22220	1	input2
-gi|9626243|ref|NC_001416.1|	22357	1	input4
-gi|9626243|ref|NC_001416.1|	22747	1	input2
-gi|9626243|ref|NC_001416.1|	23362	1	input1
-gi|9626243|ref|NC_001416.1|	23457	1	input2
-gi|9626243|ref|NC_001416.1|	24043	1	input4
-gi|9626243|ref|NC_001416.1|	24319	1	input1
-gi|9626243|ref|NC_001416.1|	24766	1	input1
-gi|9626243|ref|NC_001416.1|	24930	1	input3
-gi|9626243|ref|NC_001416.1|	25005	1	input2
-gi|9626243|ref|NC_001416.1|	25158	1	input2
-gi|9626243|ref|NC_001416.1|	25645	1	input2
-gi|9626243|ref|NC_001416.1|	26173	1	input2
-gi|9626243|ref|NC_001416.1|	26728	1	input3
-gi|9626243|ref|NC_001416.1|	26972	1	input4
-gi|9626243|ref|NC_001416.1|	27412	1	input3
-gi|9626243|ref|NC_001416.1|	27539	1	input4
-gi|9626243|ref|NC_001416.1|	27661	1	input2
-gi|9626243|ref|NC_001416.1|	27722	1	input4
-gi|9626243|ref|NC_001416.1|	27790	1	input1
-gi|9626243|ref|NC_001416.1|	27825	1	input4
-gi|9626243|ref|NC_001416.1|	27834	1	input3
-gi|9626243|ref|NC_001416.1|	28045	1	input2
-gi|9626243|ref|NC_001416.1|	28362	1	input2
-gi|9626243|ref|NC_001416.1|	29265	1	input4
-gi|9626243|ref|NC_001416.1|	29411	1	input2
-gi|9626243|ref|NC_001416.1|	29435	1	input3
-gi|9626243|ref|NC_001416.1|	29891	1	input1
-gi|9626243|ref|NC_001416.1|	30125	1	input2
-gi|9626243|ref|NC_001416.1|	30757	1	input3
-gi|9626243|ref|NC_001416.1|	30890	1	input3
-gi|9626243|ref|NC_001416.1|	31328	1	input3
-gi|9626243|ref|NC_001416.1|	31363	1	input4
-gi|9626243|ref|NC_001416.1|	31551	1	input1
-gi|9626243|ref|NC_001416.1|	32086	1	input1
-gi|9626243|ref|NC_001416.1|	32660	1	input3
-gi|9626243|ref|NC_001416.1|	33000	1	input1
-gi|9626243|ref|NC_001416.1|	33591	1	input1
-gi|9626243|ref|NC_001416.1|	33612	1	input4
-gi|9626243|ref|NC_001416.1|	33865	1	input3
-gi|9626243|ref|NC_001416.1|	34137	1	input2
-gi|9626243|ref|NC_001416.1|	34370	1	input1
-gi|9626243|ref|NC_001416.1|	34812	1	input1
-gi|9626243|ref|NC_001416.1|	34920	1	input1
-gi|9626243|ref|NC_001416.1|	35148	1	input1
-gi|9626243|ref|NC_001416.1|	35802	1	input3
-gi|9626243|ref|NC_001416.1|	35907	1	input2
-gi|9626243|ref|NC_001416.1|	36010	1	input1
-gi|9626243|ref|NC_001416.1|	36169	1	input3
-gi|9626243|ref|NC_001416.1|	36642	1	input4
-gi|9626243|ref|NC_001416.1|	37208	1	input1
-gi|9626243|ref|NC_001416.1|	37387	1	input4
-gi|9626243|ref|NC_001416.1|	37519	1	input3
-gi|9626243|ref|NC_001416.1|	37898	1	input3
-gi|9626243|ref|NC_001416.1|	38073	1	input3
-gi|9626243|ref|NC_001416.1|	38165	1	input1
-gi|9626243|ref|NC_001416.1|	38575	1	input2
-gi|9626243|ref|NC_001416.1|	39003	1	input3
-gi|9626243|ref|NC_001416.1|	39206	1	input2
-gi|9626243|ref|NC_001416.1|	39484	1	input2
-gi|9626243|ref|NC_001416.1|	39485	1	input1
-gi|9626243|ref|NC_001416.1|	40457	1	input1
-gi|9626243|ref|NC_001416.1|	40835	1	input4
-gi|9626243|ref|NC_001416.1|	40984	1	input4
-gi|9626243|ref|NC_001416.1|	41064	1	input4
-gi|9626243|ref|NC_001416.1|	41448	1	input3
-gi|9626243|ref|NC_001416.1|	41954	1	input4
-gi|9626243|ref|NC_001416.1|	42439	1	input1
-gi|9626243|ref|NC_001416.1|	43306	1	input1
-gi|9626243|ref|NC_001416.1|	43470	1	input2
-gi|9626243|ref|NC_001416.1|	44134	1	input2
-gi|9626243|ref|NC_001416.1|	44201	1	input4
-gi|9626243|ref|NC_001416.1|	44413	1	input2
-gi|9626243|ref|NC_001416.1|	45364	1	input2
-gi|9626243|ref|NC_001416.1|	45409	1	input4
-gi|9626243|ref|NC_001416.1|	46237	1	input1
-gi|9626243|ref|NC_001416.1|	46283	1	input4
-gi|9626243|ref|NC_001416.1|	46842	1	input3
-gi|9626243|ref|NC_001416.1|	47425	1	input2
-gi|9626243|ref|NC_001416.1|	47893	1	input1
+gi|9626243|ref|NC_001416.1|	403	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	753	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	1079	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	1540	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	1804	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	2123	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	3351	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	3656	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	4977	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	5482	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	5516	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	5800	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	6824	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	7897	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	9175	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	12717	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	12795	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	12959	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	16654	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	16715	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	18598	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	19469	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	20099	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	21110	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	23362	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	24319	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	24766	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	27790	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	29891	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	31551	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	32086	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	33000	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	33591	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	34370	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	34812	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	34920	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	35148	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	36010	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	37208	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	38165	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	39485	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	40457	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	42439	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	43306	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	46237	1	input1.vcf
+gi|9626243|ref|NC_001416.1|	47893	1	input1.vcf
diff -r 201984e0cab2 -r 1013b32b325a test-data/output2.tabular
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output2.tabular	Fri Oct 13 15:37:28 2023 +0000
@@ -0,0 +1,165 @@
+gi|9626243|ref|NC_001416.1|	403	1	input1
+gi|9626243|ref|NC_001416.1|	550	1	input4
+gi|9626243|ref|NC_001416.1|	586	1	input4
+gi|9626243|ref|NC_001416.1|	753	1	input1
+gi|9626243|ref|NC_001416.1|	1019	1	input4
+gi|9626243|ref|NC_001416.1|	1079	1	input1
+gi|9626243|ref|NC_001416.1|	1540	1	input1
+gi|9626243|ref|NC_001416.1|	1620	1	input4
+gi|9626243|ref|NC_001416.1|	1650	1	input4
+gi|9626243|ref|NC_001416.1|	1788	1	input4
+gi|9626243|ref|NC_001416.1|	1804	1	input1
+gi|9626243|ref|NC_001416.1|	2123	1	input1
+gi|9626243|ref|NC_001416.1|	2439	1	input3
+gi|9626243|ref|NC_001416.1|	2452	1	input4
+gi|9626243|ref|NC_001416.1|	2599	1	input2
+gi|9626243|ref|NC_001416.1|	3063	1	input4
+gi|9626243|ref|NC_001416.1|	3351	1	input1
+gi|9626243|ref|NC_001416.1|	3648	1	input3
+gi|9626243|ref|NC_001416.1|	3656	1	input1
+gi|9626243|ref|NC_001416.1|	3678	1	input2
+gi|9626243|ref|NC_001416.1|	4977	1	input1
+gi|9626243|ref|NC_001416.1|	5142	1	input2
+gi|9626243|ref|NC_001416.1|	5336	1	input2
+gi|9626243|ref|NC_001416.1|	5462	1	input3
+gi|9626243|ref|NC_001416.1|	5482	1	input1
+gi|9626243|ref|NC_001416.1|	5516	1	input1
+gi|9626243|ref|NC_001416.1|	5800	1	input1
+gi|9626243|ref|NC_001416.1|	5818	1	input4
+gi|9626243|ref|NC_001416.1|	5994	1	input2
+gi|9626243|ref|NC_001416.1|	6296	1	input4
+gi|9626243|ref|NC_001416.1|	6535	1	input2
+gi|9626243|ref|NC_001416.1|	6824	1	input1
+gi|9626243|ref|NC_001416.1|	7424	1	input2
+gi|9626243|ref|NC_001416.1|	7668	1	input3
+gi|9626243|ref|NC_001416.1|	7897	1	input1
+gi|9626243|ref|NC_001416.1|	8420	1	input3
+gi|9626243|ref|NC_001416.1|	8938	1	input4
+gi|9626243|ref|NC_001416.1|	9175	1	input1
+gi|9626243|ref|NC_001416.1|	9234	1	input4
+gi|9626243|ref|NC_001416.1|	9919	1	input3
+gi|9626243|ref|NC_001416.1|	10127	1	input2
+gi|9626243|ref|NC_001416.1|	10264	1	input3
+gi|9626243|ref|NC_001416.1|	10421	1	input4
+gi|9626243|ref|NC_001416.1|	10568	1	input4
+gi|9626243|ref|NC_001416.1|	11066	1	input3
+gi|9626243|ref|NC_001416.1|	11128	1	input4
+gi|9626243|ref|NC_001416.1|	11782	1	input2
+gi|9626243|ref|NC_001416.1|	12070	1	input3
+gi|9626243|ref|NC_001416.1|	12717	1	input1
+gi|9626243|ref|NC_001416.1|	12795	1	input1
+gi|9626243|ref|NC_001416.1|	12876	1	input4
+gi|9626243|ref|NC_001416.1|	12959	1	input1
+gi|9626243|ref|NC_001416.1|	12970	1	input3
+gi|9626243|ref|NC_001416.1|	13107	1	input3
+gi|9626243|ref|NC_001416.1|	13264	1	input2
+gi|9626243|ref|NC_001416.1|	13542	1	input2
+gi|9626243|ref|NC_001416.1|	13647	1	input4
+gi|9626243|ref|NC_001416.1|	13952	1	input2
+gi|9626243|ref|NC_001416.1|	13971	1	input3
+gi|9626243|ref|NC_001416.1|	15384	1	input3
+gi|9626243|ref|NC_001416.1|	15715	1	input2
+gi|9626243|ref|NC_001416.1|	15967	1	input2
+gi|9626243|ref|NC_001416.1|	16070	1	input3
+gi|9626243|ref|NC_001416.1|	16654	1	input1
+gi|9626243|ref|NC_001416.1|	16715	1	input1
+gi|9626243|ref|NC_001416.1|	17142	1	input2
+gi|9626243|ref|NC_001416.1|	17311	1	input2
+gi|9626243|ref|NC_001416.1|	17854	1	input2
+gi|9626243|ref|NC_001416.1|	18151	1	input3
+gi|9626243|ref|NC_001416.1|	18188	1	input4
+gi|9626243|ref|NC_001416.1|	18210	1	input4
+gi|9626243|ref|NC_001416.1|	18420	1	input2
+gi|9626243|ref|NC_001416.1|	18598	1	input1
+gi|9626243|ref|NC_001416.1|	18652	1	input2
+gi|9626243|ref|NC_001416.1|	18989	1	input3
+gi|9626243|ref|NC_001416.1|	19208	1	input2
+gi|9626243|ref|NC_001416.1|	19448	1	input3
+gi|9626243|ref|NC_001416.1|	19469	1	input1
+gi|9626243|ref|NC_001416.1|	20079	1	input3
+gi|9626243|ref|NC_001416.1|	20099	1	input1
+gi|9626243|ref|NC_001416.1|	20289	1	input3
+gi|9626243|ref|NC_001416.1|	20367	1	input2
+gi|9626243|ref|NC_001416.1|	21110	1	input1
+gi|9626243|ref|NC_001416.1|	21320	1	input2
+gi|9626243|ref|NC_001416.1|	21653	1	input3
+gi|9626243|ref|NC_001416.1|	22220	1	input2
+gi|9626243|ref|NC_001416.1|	22357	1	input4
+gi|9626243|ref|NC_001416.1|	22747	1	input2
+gi|9626243|ref|NC_001416.1|	23362	1	input1
+gi|9626243|ref|NC_001416.1|	23457	1	input2
+gi|9626243|ref|NC_001416.1|	24043	1	input4
+gi|9626243|ref|NC_001416.1|	24319	1	input1
+gi|9626243|ref|NC_001416.1|	24766	1	input1
+gi|9626243|ref|NC_001416.1|	24930	1	input3
+gi|9626243|ref|NC_001416.1|	25005	1	input2
+gi|9626243|ref|NC_001416.1|	25158	1	input2
+gi|9626243|ref|NC_001416.1|	25645	1	input2
+gi|9626243|ref|NC_001416.1|	26173	1	input2
+gi|9626243|ref|NC_001416.1|	26728	1	input3
+gi|9626243|ref|NC_001416.1|	26972	1	input4
+gi|9626243|ref|NC_001416.1|	27412	1	input3
+gi|9626243|ref|NC_001416.1|	27539	1	input4
+gi|9626243|ref|NC_001416.1|	27661	1	input2
+gi|9626243|ref|NC_001416.1|	27722	1	input4
+gi|9626243|ref|NC_001416.1|	27790	1	input1
+gi|9626243|ref|NC_001416.1|	27825	1	input4
+gi|9626243|ref|NC_001416.1|	27834	1	input3
+gi|9626243|ref|NC_001416.1|	28045	1	input2
+gi|9626243|ref|NC_001416.1|	28362	1	input2
+gi|9626243|ref|NC_001416.1|	29265	1	input4
+gi|9626243|ref|NC_001416.1|	29411	1	input2
+gi|9626243|ref|NC_001416.1|	29435	1	input3
+gi|9626243|ref|NC_001416.1|	29891	1	input1
+gi|9626243|ref|NC_001416.1|	30125	1	input2
+gi|9626243|ref|NC_001416.1|	30757	1	input3
+gi|9626243|ref|NC_001416.1|	30890	1	input3
+gi|9626243|ref|NC_001416.1|	31328	1	input3
+gi|9626243|ref|NC_001416.1|	31363	1	input4
+gi|9626243|ref|NC_001416.1|	31551	1	input1
+gi|9626243|ref|NC_001416.1|	32086	1	input1
+gi|9626243|ref|NC_001416.1|	32660	1	input3
+gi|9626243|ref|NC_001416.1|	33000	1	input1
+gi|9626243|ref|NC_001416.1|	33591	1	input1
+gi|9626243|ref|NC_001416.1|	33612	1	input4
+gi|9626243|ref|NC_001416.1|	33865	1	input3
+gi|9626243|ref|NC_001416.1|	34137	1	input2
+gi|9626243|ref|NC_001416.1|	34370	1	input1
+gi|9626243|ref|NC_001416.1|	34812	1	input1
+gi|9626243|ref|NC_001416.1|	34920	1	input1
+gi|9626243|ref|NC_001416.1|	35148	1	input1
+gi|9626243|ref|NC_001416.1|	35802	1	input3
+gi|9626243|ref|NC_001416.1|	35907	1	input2
+gi|9626243|ref|NC_001416.1|	36010	1	input1
+gi|9626243|ref|NC_001416.1|	36169	1	input3
+gi|9626243|ref|NC_001416.1|	36642	1	input4
+gi|9626243|ref|NC_001416.1|	37208	1	input1
+gi|9626243|ref|NC_001416.1|	37387	1	input4
+gi|9626243|ref|NC_001416.1|	37519	1	input3
+gi|9626243|ref|NC_001416.1|	37898	1	input3
+gi|9626243|ref|NC_001416.1|	38073	1	input3
+gi|9626243|ref|NC_001416.1|	38165	1	input1
+gi|9626243|ref|NC_001416.1|	38575	1	input2
+gi|9626243|ref|NC_001416.1|	39003	1	input3
+gi|9626243|ref|NC_001416.1|	39206	1	input2
+gi|9626243|ref|NC_001416.1|	39484	1	input2
+gi|9626243|ref|NC_001416.1|	39485	1	input1
+gi|9626243|ref|NC_001416.1|	40457	1	input1
+gi|9626243|ref|NC_001416.1|	40835	1	input4
+gi|9626243|ref|NC_001416.1|	40984	1	input4
+gi|9626243|ref|NC_001416.1|	41064	1	input4
+gi|9626243|ref|NC_001416.1|	41448	1	input3
+gi|9626243|ref|NC_001416.1|	41954	1	input4
+gi|9626243|ref|NC_001416.1|	42439	1	input1
+gi|9626243|ref|NC_001416.1|	43306	1	input1
+gi|9626243|ref|NC_001416.1|	43470	1	input2
+gi|9626243|ref|NC_001416.1|	44134	1	input2
+gi|9626243|ref|NC_001416.1|	44201	1	input4
+gi|9626243|ref|NC_001416.1|	44413	1	input2
+gi|9626243|ref|NC_001416.1|	45364	1	input2
+gi|9626243|ref|NC_001416.1|	45409	1	input4
+gi|9626243|ref|NC_001416.1|	46237	1	input1
+gi|9626243|ref|NC_001416.1|	46283	1	input4
+gi|9626243|ref|NC_001416.1|	46842	1	input3
+gi|9626243|ref|NC_001416.1|	47425	1	input2
+gi|9626243|ref|NC_001416.1|	47893	1	input1