# HG changeset patch
# User greg
# Date 1700675950 0
# Node ID b64c035732714439f2534b4c224c0093c12648a3
# Parent  1013b32b325a5f78da42fdfda915970dc03d1622
Uploaded

diff -r 1013b32b325a -r b64c03573271 cfsan_snp_pipeline_merge_sites.xml
--- a/cfsan_snp_pipeline_merge_sites.xml	Fri Oct 13 15:37:28 2023 +0000
+++ b/cfsan_snp_pipeline_merge_sites.xml	Wed Nov 22 17:59:10 2023 +0000
@@ -7,10 +7,10 @@
     <command detect_errors="exit_code"><![CDATA[
 python '$__tool_directory__/snp_wind.py' ./
 #if str($input_type_cond.input_type) == 'single':
-    -n '$input_vcf.element_identifier'
-    -f '$input_vcf'
+    -n '$input_type_cond.input_vcf.element_identifier'
+    -f '$input_type_cond.input_vcf'
 #else:
-    #for $input_vcf in $input_vcf_collection
+    #for $input_vcf in $input_type_cond.input_vcf_collection:
         -n '$input_vcf.element_identifier'
         -f '$input_vcf'
     #end for