Mercurial > repos > greg > cfsan_snp_pipeline_merge_vcfs
comparison test-data/samples/sample4/consensus.vcf @ 0:e958c5f7c9d1 draft
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author | greg |
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date | Wed, 22 Nov 2023 15:34:14 +0000 |
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-1:000000000000 | 0:e958c5f7c9d1 |
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1 ##fileformat=VCFv4.1 | |
2 ##fileDate=20180103 | |
3 ##source=CFSAN SNP-Pipeline 1.0.1 | |
4 ##reference=lambda_virus.fasta | |
5 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data"> | |
6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
7 ##FORMAT=<ID=SDP,Number=1,Type=Integer,Description="Raw read depth"> | |
8 ##FORMAT=<ID=RD,Number=1,Type=Integer,Description="Depth of reference-supporting bases (reads1)"> | |
9 ##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Depth of variant-supporting bases (reads2)"> | |
10 ##FORMAT=<ID=RDF,Number=1,Type=Integer,Description="Depth of reference-supporting bases on forward strand (reads1plus)"> | |
11 ##FORMAT=<ID=RDR,Number=1,Type=Integer,Description="Depth of reference-supporting bases on reverse strand (reads1minus)"> | |
12 ##FORMAT=<ID=ADF,Number=1,Type=Integer,Description="Depth of variant-supporting bases on forward strand (reads2plus)"> | |
13 ##FORMAT=<ID=ADR,Number=1,Type=Integer,Description="Depth of variant-supporting bases on reverse strand (reads2minus)"> | |
14 ##FORMAT=<ID=FT,Number=1,Type=String,Description="Genotype filters using the same codes as the FILTER data element"> | |
15 ##FILTER=<ID=PASS,Description="All filters passed"> | |
16 ##FILTER=<ID=RawDpth,Description="No read depth"> | |
17 ##FILTER=<ID=VarFreq60,Description="Variant base frequency below 0.60"> | |
18 ##FILTER=<ID=StrDpth0,Description="Less than 0 variant-supporing reads on at least one strand"> | |
19 ##FILTER=<ID=StrBias0,Description="Fraction of variant supporting reads below 0.00 on one strand"> | |
20 ##FILTER=<ID=Region,Description="Position is in dense region of snps or near the end of the contig."> | |
21 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample4 | |
22 gi|9626243|ref|NC_001416.1| 403 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:15:15:0:11:4:0:0:PASS | |
23 gi|9626243|ref|NC_001416.1| 550 . G A . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:26:0:26:0:0:14:12:PASS | |
24 gi|9626243|ref|NC_001416.1| 586 . C G . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:27:0:25:0:0:17:8:PASS | |
25 gi|9626243|ref|NC_001416.1| 753 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:12:11:0:0:PASS | |
26 gi|9626243|ref|NC_001416.1| 1019 . C T . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:22:0:22:0:0:8:14:PASS | |
27 gi|9626243|ref|NC_001416.1| 1079 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:27:27:0:11:16:0:0:PASS | |
28 gi|9626243|ref|NC_001416.1| 1540 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:14:14:0:0:PASS | |
29 gi|9626243|ref|NC_001416.1| 1620 . G A . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:19:0:19:0:0:7:12:PASS | |
30 gi|9626243|ref|NC_001416.1| 1650 . G C . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:26:0:26:0:0:10:16:PASS | |
31 gi|9626243|ref|NC_001416.1| 1788 . A T . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:16:0:16:0:0:9:7:PASS | |
32 gi|9626243|ref|NC_001416.1| 1804 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:7:11:0:0:PASS | |
33 gi|9626243|ref|NC_001416.1| 2123 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:13:15:0:0:PASS | |
34 gi|9626243|ref|NC_001416.1| 2439 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:27:27:0:10:17:0:0:PASS | |
35 gi|9626243|ref|NC_001416.1| 2452 . A T . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:23:1:22:1:0:13:9:PASS | |
36 gi|9626243|ref|NC_001416.1| 2599 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:19:0:8:11:0:0:PASS | |
37 gi|9626243|ref|NC_001416.1| 3063 . G A . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:22:0:21:0:0:10:11:PASS | |
38 gi|9626243|ref|NC_001416.1| 3351 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:10:14:0:0:PASS | |
39 gi|9626243|ref|NC_001416.1| 3648 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:10:12:0:0:PASS | |
40 gi|9626243|ref|NC_001416.1| 3656 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:18:10:0:0:PASS | |
41 gi|9626243|ref|NC_001416.1| 3678 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:11:11:0:0:PASS | |
42 gi|9626243|ref|NC_001416.1| 4977 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:27:26:1:14:12:0:1:PASS | |
43 gi|9626243|ref|NC_001416.1| 5142 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:9:16:0:0:PASS | |
44 gi|9626243|ref|NC_001416.1| 5336 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:33:33:0:11:22:0:0:PASS | |
45 gi|9626243|ref|NC_001416.1| 5462 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:32:32:0:10:22:0:0:PASS | |
46 gi|9626243|ref|NC_001416.1| 5482 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:25:1:13:12:0:1:PASS | |
47 gi|9626243|ref|NC_001416.1| 5516 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:23:2:13:10:0:2:PASS | |
48 gi|9626243|ref|NC_001416.1| 5800 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:10:8:0:0:PASS | |
49 gi|9626243|ref|NC_001416.1| 5818 . G T . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:23:0:22:0:0:11:11:PASS | |
50 gi|9626243|ref|NC_001416.1| 5994 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:15:10:0:0:PASS | |
51 gi|9626243|ref|NC_001416.1| 6296 . T A . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:26:0:25:0:0:13:12:PASS | |
52 gi|9626243|ref|NC_001416.1| 6535 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:27:27:0:13:14:0:0:PASS | |
53 gi|9626243|ref|NC_001416.1| 6824 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:12:11:0:0:PASS | |
54 gi|9626243|ref|NC_001416.1| 7424 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:6:6:0:0:6:0:0:PASS | |
55 gi|9626243|ref|NC_001416.1| 7668 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:14:14:0:10:4:0:0:PASS | |
56 gi|9626243|ref|NC_001416.1| 7897 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:11:10:0:0:PASS | |
57 gi|9626243|ref|NC_001416.1| 8420 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:12:12:0:0:PASS | |
58 gi|9626243|ref|NC_001416.1| 8938 . T A . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:29:0:29:0:0:17:12:PASS | |
59 gi|9626243|ref|NC_001416.1| 9175 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:31:31:0:13:18:0:0:PASS | |
60 gi|9626243|ref|NC_001416.1| 9234 . C T . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:21:0:21:0:0:10:11:PASS | |
61 gi|9626243|ref|NC_001416.1| 9919 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:11:13:0:0:PASS | |
62 gi|9626243|ref|NC_001416.1| 10127 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:12:12:0:0:PASS | |
63 gi|9626243|ref|NC_001416.1| 10264 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:14:4:0:0:PASS | |
64 gi|9626243|ref|NC_001416.1| 10421 . G T . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:18:0:18:0:0:8:10:PASS | |
65 gi|9626243|ref|NC_001416.1| 10568 . C T . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:21:0:21:0:0:10:11:PASS | |
66 gi|9626243|ref|NC_001416.1| 11066 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:27:26:1:9:17:0:1:PASS | |
67 gi|9626243|ref|NC_001416.1| 11128 . T A . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:25:0:25:0:0:10:15:PASS | |
68 gi|9626243|ref|NC_001416.1| 11782 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:11:12:0:0:PASS | |
69 gi|9626243|ref|NC_001416.1| 12070 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:12:6:0:0:PASS | |
70 gi|9626243|ref|NC_001416.1| 12717 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:20:19:1:7:12:1:0:PASS | |
71 gi|9626243|ref|NC_001416.1| 12795 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:15:9:0:0:PASS | |
72 gi|9626243|ref|NC_001416.1| 12876 . G C . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:19:0:19:0:0:7:12:PASS | |
73 gi|9626243|ref|NC_001416.1| 12959 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:21:2:10:11:2:0:PASS | |
74 gi|9626243|ref|NC_001416.1| 12970 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:13:10:0:0:PASS | |
75 gi|9626243|ref|NC_001416.1| 13107 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:21:1:8:13:0:1:PASS | |
76 gi|9626243|ref|NC_001416.1| 13264 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:12:11:0:0:PASS | |
77 gi|9626243|ref|NC_001416.1| 13542 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:13:10:0:0:PASS | |
78 gi|9626243|ref|NC_001416.1| 13647 . C T . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:17:0:17:0:0:11:6:PASS | |
79 gi|9626243|ref|NC_001416.1| 13952 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:33:33:0:12:21:0:0:PASS | |
80 gi|9626243|ref|NC_001416.1| 13971 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:30:29:1:11:18:0:1:PASS | |
81 gi|9626243|ref|NC_001416.1| 15384 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:14:10:0:0:PASS | |
82 gi|9626243|ref|NC_001416.1| 15715 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:8:15:0:0:PASS | |
83 gi|9626243|ref|NC_001416.1| 15967 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:29:28:1:14:14:1:0:PASS | |
84 gi|9626243|ref|NC_001416.1| 16070 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:24:1:11:13:0:1:PASS | |
85 gi|9626243|ref|NC_001416.1| 16654 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:10:15:0:0:PASS | |
86 gi|9626243|ref|NC_001416.1| 16715 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:20:20:0:6:14:0:0:PASS | |
87 gi|9626243|ref|NC_001416.1| 17142 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:15:15:0:6:9:0:0:PASS | |
88 gi|9626243|ref|NC_001416.1| 17311 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:10:10:0:1:9:0:0:PASS | |
89 gi|9626243|ref|NC_001416.1| 17854 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:36:34:2:18:16:0:2:PASS | |
90 gi|9626243|ref|NC_001416.1| 18151 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:14:11:0:0:PASS | |
91 gi|9626243|ref|NC_001416.1| 18188 . T C . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:31:0:31:0:0:17:14:PASS | |
92 gi|9626243|ref|NC_001416.1| 18210 . C G . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:29:0:29:0:0:15:14:PASS | |
93 gi|9626243|ref|NC_001416.1| 18420 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:17:17:0:6:11:0:0:PASS | |
94 gi|9626243|ref|NC_001416.1| 18598 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:20:20:0:12:8:0:0:PASS | |
95 gi|9626243|ref|NC_001416.1| 18652 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:12:9:0:0:PASS | |
96 gi|9626243|ref|NC_001416.1| 18989 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:7:14:0:0:PASS | |
97 gi|9626243|ref|NC_001416.1| 19208 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:31:30:1:15:15:0:1:PASS | |
98 gi|9626243|ref|NC_001416.1| 19448 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:33:33:0:21:12:0:0:PASS | |
99 gi|9626243|ref|NC_001416.1| 19469 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:31:31:0:17:14:0:0:PASS | |
100 gi|9626243|ref|NC_001416.1| 20079 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:32:32:0:17:15:0:0:PASS | |
101 gi|9626243|ref|NC_001416.1| 20099 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:10:12:0:0:PASS | |
102 gi|9626243|ref|NC_001416.1| 20289 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:29:28:1:13:15:1:0:PASS | |
103 gi|9626243|ref|NC_001416.1| 20367 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:26:0:10:16:0:0:PASS | |
104 gi|9626243|ref|NC_001416.1| 21110 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:16:16:0:9:7:0:0:PASS | |
105 gi|9626243|ref|NC_001416.1| 21320 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:9:16:0:0:PASS | |
106 gi|9626243|ref|NC_001416.1| 21653 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:19:0:10:9:0:0:PASS | |
107 gi|9626243|ref|NC_001416.1| 22220 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:22:1:8:14:0:1:PASS | |
108 gi|9626243|ref|NC_001416.1| 22357 . G A . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:21:0:21:0:0:11:10:PASS | |
109 gi|9626243|ref|NC_001416.1| 22747 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:8:13:0:0:PASS | |
110 gi|9626243|ref|NC_001416.1| 23362 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:11:13:0:0:PASS | |
111 gi|9626243|ref|NC_001416.1| 23457 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:25:1:12:13:1:0:PASS | |
112 gi|9626243|ref|NC_001416.1| 24043 . C A . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:15:0:15:0:0:7:8:PASS | |
113 gi|9626243|ref|NC_001416.1| 24319 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:11:10:0:0:PASS | |
114 gi|9626243|ref|NC_001416.1| 24766 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:14:14:0:5:9:0:0:PASS | |
115 gi|9626243|ref|NC_001416.1| 24930 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:10:9:1:4:5:1:0:PASS | |
116 gi|9626243|ref|NC_001416.1| 25005 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:16:16:0:10:6:0:0:PASS | |
117 gi|9626243|ref|NC_001416.1| 25158 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:20:1:12:8:0:1:PASS | |
118 gi|9626243|ref|NC_001416.1| 25645 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:26:26:0:13:13:0:0:PASS | |
119 gi|9626243|ref|NC_001416.1| 26173 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:11:14:0:0:PASS | |
120 gi|9626243|ref|NC_001416.1| 26728 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:9:13:0:0:PASS | |
121 gi|9626243|ref|NC_001416.1| 26972 . A T . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:22:1:21:1:0:11:10:PASS | |
122 gi|9626243|ref|NC_001416.1| 27412 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:15:15:0:7:8:0:0:PASS | |
123 gi|9626243|ref|NC_001416.1| 27539 . A C . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:11:0:11:0:0:5:6:PASS | |
124 gi|9626243|ref|NC_001416.1| 27661 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:10:8:0:0:PASS | |
125 gi|9626243|ref|NC_001416.1| 27722 . C A . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:26:0:26:0:0:16:10:PASS | |
126 gi|9626243|ref|NC_001416.1| 27790 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:19:0:14:5:0:0:PASS | |
127 gi|9626243|ref|NC_001416.1| 27825 . A G . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:22:0:22:0:0:14:8:PASS | |
128 gi|9626243|ref|NC_001416.1| 27834 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:20:1:11:9:1:0:PASS | |
129 gi|9626243|ref|NC_001416.1| 28045 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:9:9:0:0:PASS | |
130 gi|9626243|ref|NC_001416.1| 28362 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:13:13:0:13:0:0:0:PASS | |
131 gi|9626243|ref|NC_001416.1| 29265 . T C . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:28:0:27:0:0:9:18:PASS | |
132 gi|9626243|ref|NC_001416.1| 29411 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:36:35:1:17:18:1:0:PASS | |
133 gi|9626243|ref|NC_001416.1| 29435 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:32:31:1:15:16:1:0:PASS | |
134 gi|9626243|ref|NC_001416.1| 29891 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:29:28:1:15:13:1:0:PASS | |
135 gi|9626243|ref|NC_001416.1| 30125 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:31:29:2:11:18:1:1:PASS | |
136 gi|9626243|ref|NC_001416.1| 30757 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:13:15:0:0:PASS | |
137 gi|9626243|ref|NC_001416.1| 30890 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:11:13:0:0:PASS | |
138 gi|9626243|ref|NC_001416.1| 31328 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:9:9:0:9:0:0:0:PASS | |
139 gi|9626243|ref|NC_001416.1| 31363 . C G . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:9:0:9:0:0:8:1:PASS | |
140 gi|9626243|ref|NC_001416.1| 31551 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:14:7:0:0:PASS | |
141 gi|9626243|ref|NC_001416.1| 32086 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:19:0:10:9:0:0:PASS | |
142 gi|9626243|ref|NC_001416.1| 32660 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:23:1:12:11:1:0:PASS | |
143 gi|9626243|ref|NC_001416.1| 33000 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:27:26:1:12:14:0:1:PASS | |
144 gi|9626243|ref|NC_001416.1| 33591 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:19:0:9:10:0:0:PASS | |
145 gi|9626243|ref|NC_001416.1| 33612 . C A . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:19:0:18:0:0:7:11:PASS | |
146 gi|9626243|ref|NC_001416.1| 33865 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:12:9:0:0:PASS | |
147 gi|9626243|ref|NC_001416.1| 34137 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:24:0:13:11:0:0:PASS | |
148 gi|9626243|ref|NC_001416.1| 34370 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:32:31:1:15:16:1:0:PASS | |
149 gi|9626243|ref|NC_001416.1| 34812 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:31:31:0:12:19:0:0:PASS | |
150 gi|9626243|ref|NC_001416.1| 34920 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:6:16:0:0:PASS | |
151 gi|9626243|ref|NC_001416.1| 35148 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:17:17:0:11:6:0:0:PASS | |
152 gi|9626243|ref|NC_001416.1| 35802 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:7:14:0:0:PASS | |
153 gi|9626243|ref|NC_001416.1| 35907 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:18:1:12:6:0:1:PASS | |
154 gi|9626243|ref|NC_001416.1| 36010 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:11:12:0:0:PASS | |
155 gi|9626243|ref|NC_001416.1| 36169 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:10:18:0:0:PASS | |
156 gi|9626243|ref|NC_001416.1| 36642 . T C . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:17:0:17:0:0:2:15:PASS | |
157 gi|9626243|ref|NC_001416.1| 37208 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:14:11:0:0:PASS | |
158 gi|9626243|ref|NC_001416.1| 37387 . A T . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:15:0:15:0:0:7:8:PASS | |
159 gi|9626243|ref|NC_001416.1| 37519 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:18:1:12:6:1:0:PASS | |
160 gi|9626243|ref|NC_001416.1| 37898 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:16:15:1:11:4:0:1:PASS | |
161 gi|9626243|ref|NC_001416.1| 38073 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:14:14:0:9:5:0:0:PASS | |
162 gi|9626243|ref|NC_001416.1| 38165 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:18:18:0:7:11:0:0:PASS | |
163 gi|9626243|ref|NC_001416.1| 38575 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:24:23:1:16:7:0:1:PASS | |
164 gi|9626243|ref|NC_001416.1| 39003 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:14:11:0:0:PASS | |
165 gi|9626243|ref|NC_001416.1| 39206 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:11:14:0:0:PASS | |
166 gi|9626243|ref|NC_001416.1| 39484 . C . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:21:21:0:10:11:0:0:PASS | |
167 gi|9626243|ref|NC_001416.1| 39485 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:19:0:7:12:0:0:PASS | |
168 gi|9626243|ref|NC_001416.1| 40457 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:30:30:0:15:15:0:0:PASS | |
169 gi|9626243|ref|NC_001416.1| 40835 . T C . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:25:0:25:0:0:16:9:PASS | |
170 gi|9626243|ref|NC_001416.1| 40984 . A G . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:22:0:21:0:0:12:9:PASS | |
171 gi|9626243|ref|NC_001416.1| 41064 . T G . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:22:0:21:0:0:10:11:PASS | |
172 gi|9626243|ref|NC_001416.1| 41448 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:19:18:1:9:9:1:0:PASS | |
173 gi|9626243|ref|NC_001416.1| 41954 . T C . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:23:0:23:0:0:11:12:PASS | |
174 gi|9626243|ref|NC_001416.1| 42439 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:11:14:0:0:PASS | |
175 gi|9626243|ref|NC_001416.1| 43306 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:28:0:10:18:0:0:PASS | |
176 gi|9626243|ref|NC_001416.1| 43470 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:27:26:1:17:9:0:1:PASS | |
177 gi|9626243|ref|NC_001416.1| 44134 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:27:26:1:13:13:0:1:PASS | |
178 gi|9626243|ref|NC_001416.1| 44201 . G C . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:25:0:24:0:0:15:9:PASS | |
179 gi|9626243|ref|NC_001416.1| 44413 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:15:15:0:1:14:0:0:PASS | |
180 gi|9626243|ref|NC_001416.1| 45364 . A . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:27:26:1:11:15:1:0:PASS | |
181 gi|9626243|ref|NC_001416.1| 45409 . C G . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:21:0:21:0:0:8:13:PASS | |
182 gi|9626243|ref|NC_001416.1| 46237 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:28:26:2:10:16:0:2:PASS | |
183 gi|9626243|ref|NC_001416.1| 46283 . C G . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 1:22:0:22:0:0:11:11:PASS | |
184 gi|9626243|ref|NC_001416.1| 46842 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:25:25:0:10:15:0:0:PASS | |
185 gi|9626243|ref|NC_001416.1| 47425 . T . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:23:23:0:12:11:0:0:PASS | |
186 gi|9626243|ref|NC_001416.1| 47893 . G . . PASS NS=1 GT:SDP:RD:AD:RDF:RDR:ADF:ADR:FT 0:22:22:0:11:11:0:0:PASS |