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1 <macros>
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2 <token name="@TOOL_VERSION@">2.2.1</token>
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3 <token name="@VERSION_SUFFIX@">0</token>
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4 <token name="@PROFILE@">21.01</token>
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5 <xml name="requirements">
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6 <requirements>
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7 <requirement type="package" version="@TOOL_VERSION@">snp-pipeline</requirement>
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8 <requirement type="package" version="3.6.8">python</requirement>
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9 </requirements>
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10 </xml>
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11 <xml name="input_type_cond">
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12 <conditional name="input_type_cond">
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13 <param name="input_type" type="select" label="Choose the category for the files to be analyzed">
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14 <option value="single" selected="true">Single files</option>
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15 <option value="collection">Collection of files</option>
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16 </param>
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17 <when value="single">
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18 <param name="input_fasta" type="data" format="fasta" label="FASTA file"/>
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19 </when>
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20 <when value="collection">
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21 <param name="input_fasta_collection" type="data_collection" format="fasta" collection_type="list" label="Collection of fasta files"/>
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22 </when>
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23 </conditional>
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24 </xml>
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25 <xml name="reference_cond">
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26 <conditional name="reference_cond">
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27 <param name="reference_source" type="select" label="Choose the source for the reference genome">
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28 <option value="cached" selected="true">locally cached</option>
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29 <option value="history">from history</option>
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30 </param>
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31 <when value="cached">
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32 <param name="reference" type="select" label="Select reference">
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33 <options from_data_table="all_fasta">
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34 <filter type="sort_by" column="2"/>
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35 <validator type="no_options" message="No assemblies are available for the selected input dataset"/>
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36 </options>
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37 </param>
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38 </when>
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39 <when value="history">
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40 <param name="reference" type="data" format="fasta" label="FASTA Reference from your history"/>
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41 </when>
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42 </conditional>
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43 </xml>
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44 <xml name="citations">
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45 <citations>
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46 <citation type="doi">10.7717/peerj-cs.20</citation>
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47 </citations>
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48 </xml>
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49 </macros>
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50
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