Mercurial > repos > greg > cfsan_snp_pipeline_snp_matrix
annotate tool-data/all_fasta.loc.sample @ 0:6b0a13deae92 draft
Uploaded
| author | greg |
|---|---|
| date | Fri, 13 Oct 2023 20:26:32 +0000 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 #This file lists the locations and dbkeys of all the fasta files |
| 2 #under the tool-data/genome directory (a directory that contains a directory | |
| 3 #for each build). This file has the format (white space characters are | |
| 4 #TAB characters): | |
| 5 # | |
| 6 #<unique_build_id> <dbkey> <display_name> <file_path> | |
| 7 # | |
| 8 #So, all_fasta.loc could look something like this: | |
| 9 # | |
| 10 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa | |
| 11 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa | |
| 12 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa | |
| 13 # | |
| 14 #Your all_fasta.loc file should contain an entry for each individual | |
| 15 #fasta file. |