diff macros.xml @ 0:6b0a13deae92 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Fri Oct 13 20:26:32 2023 +0000
@@ -0,0 +1,50 @@
+<macros>
+    <token name="@TOOL_VERSION@">2.2.1</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">21.01</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">snp-pipeline</requirement>
+            <requirement type="package" version="3.6.8">python</requirement>
+        </requirements>
+    </xml>
+    <xml name="input_type_cond">
+        <conditional name="input_type_cond">
+            <param name="input_type" type="select" label="Choose the category for the files to be analyzed">
+                <option value="single" selected="true">Single files</option>
+                <option value="collection">Collection of files</option>
+            </param>
+            <when value="single">
+                <param name="input_fasta" type="data" format="fasta" label="FASTA file"/>
+            </when>
+            <when value="collection">
+                <param name="input_fasta_collection" type="data_collection" format="fasta" collection_type="list" label="Collection of fasta files"/>
+            </when>
+        </conditional>
+    </xml>
+    <xml name="reference_cond">
+        <conditional name="reference_cond">
+            <param name="reference_source" type="select" label="Choose the source for the reference genome">
+                <option value="cached" selected="true">locally cached</option>
+                <option value="history">from history</option>
+            </param>
+            <when value="cached">
+                <param name="reference" type="select" label="Select reference">
+                    <options from_data_table="all_fasta">
+                        <filter type="sort_by" column="2"/>
+                        <validator type="no_options" message="No assemblies are available for the selected input dataset"/>
+                    </options>
+                </param>
+            </when>
+            <when value="history">
+                <param name="reference" type="data" format="fasta" label="FASTA Reference from your history"/>
+            </when>
+        </conditional>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.7717/peerj-cs.20</citation>
+        </citations>
+    </xml>
+</macros>
+