Mercurial > repos > greg > data_manager_vsnp_excel
comparison data_manager/vsnp_excel_fetcher.xml @ 3:4681f7129de9 draft default tip
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author | greg |
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date | Wed, 06 May 2020 10:10:03 -0400 |
parents | 79fcb638533e |
children |
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2:79fcb638533e | 3:4681f7129de9 |
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21 <outputs> | 21 <outputs> |
22 <data name="out_file" format="data_manager_json" /> | 22 <data name="out_file" format="data_manager_json" /> |
23 </outputs> | 23 </outputs> |
24 <tests> | 24 <tests> |
25 <test> | 25 <test> |
26 <param name="all_fasta_source" value="AF2122"/> | |
27 <param name="url" value="https://github.com/USDA-VS/vSNP_reference_options/raw/master/Mycobacterium_AF2122/Mbovis_define_filter.xlsx"/> | |
28 <output name="out_file" value="vsnp_excel.json" compare="contains"/> | |
26 </test> | 29 </test> |
27 </tests> | 30 </tests> |
28 <help><![CDATA[ | 31 <help><![CDATA[ |
29 This tool fetches a vSNP Excel file associated with each supported genome reference to populate the vsnp_excel data table. The dbkey and name fields | 32 This tool fetches a vSNP Excel file associated with each supported genome reference to populate the vsnp_excel data table. The dbkey and name fields |
30 in the vsnp data table are inherited from the *all_fasta* data table, so no user entry is necessary. These public vSNP Excel files are available in GitHub | 33 in the vsnp data table are inherited from the *all_fasta* data table, so no user entry is necessary. These public vSNP Excel files are available in GitHub |