comparison data_manager/vsnp_genbank_fetcher.xml @ 2:df67ba6db5de draft default tip

Uploaded

1:f136bf6d2f4c

    <outputs>
        <data name="out_file" format="data_manager_json" />
    </outputs>
    <tests>
        <test>
        </test>
    </tests>
    <help><![CDATA[
This tool fetches a vSNP Genbank file associated with each supported genome reference to populate the vsnp_genbank data table.  The dbkey and name fields
in the vsnp data table are inherited from the *all_fasta* data table, so no user entry is necessary.  These public vSNP Genbank files are available in GitHub

2:df67ba6db5de

    <outputs>
        <data name="out_file" format="data_manager_json" />
    </outputs>
    <tests>
        <test>
            <param name="all_fasta_source" value="AF2122"/>
            <param name="url" value="https://github.com/USDA-VS/vSNP_reference_options/raw/master/Mycobacterium_AF2122/NC_002945v4.gbk"/>
            <output name="out_file" value="vsnp_genbank.json" compare="contains"/>
        </test>
    </tests>
    <help><![CDATA[
This tool fetches a vSNP Genbank file associated with each supported genome reference to populate the vsnp_genbank data table.  The dbkey and name fields
in the vsnp data table are inherited from the *all_fasta* data table, so no user entry is necessary.  These public vSNP Genbank files are available in GitHub