Mercurial > repos > greg > draw_amr_matrix
comparison draw_amr_matrix.xml @ 14:c5e80637cf3d draft
Uploaded
| author | greg |
|---|---|
| date | Tue, 28 Mar 2023 13:42:30 +0000 |
| parents | b1a7e04e6371 |
| children | 487a3c008812 |
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| 13:b1a7e04e6371 | 14:c5e80637cf3d |
|---|---|
| 37 #end if | 37 #end if |
| 38 --amr_gene_drug_file '$amr_gene_drug_file' | 38 --amr_gene_drug_file '$amr_gene_drug_file' |
| 39 --reference_genome reference.fa | 39 --reference_genome reference.fa |
| 40 --amr_matrix_png_dir 'amr_matrix_png_dir' | 40 --amr_matrix_png_dir 'amr_matrix_png_dir' |
| 41 --errors '$errors' | 41 --errors '$errors' |
| 42 --in_test_mode '$in_test_mode' | |
| 42 #if str($output_process_log) == 'yes': | 43 #if str($output_process_log) == 'yes': |
| 43 && mv 'process_log' '$process_log' | 44 && mv 'process_log' '$process_log' |
| 44 #end if | 45 #end if |
| 45 --in_test_mode '$in_test_mode' | |
| 46 ]]></command> | 46 ]]></command> |
| 47 <inputs> | 47 <inputs> |
| 48 <conditional name="reference_source"> | 48 <conditional name="reference_source"> |
| 49 <param name="reference_source_selector" type="select" label="Select a reference genome from your history or use a cached genome index?"> | 49 <param name="reference_source_selector" type="select" label="Select a reference genome from your history or use a cached genome index?"> |
| 50 <option value="cached">Use a cached genome index</option> | 50 <option value="cached">Use a cached genome index</option> |