comparison draw_amr_matrix.xml @ 11:da1c9c1be421 draft

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10:03240ffe969a

        <test>
            <param name="reference_source_selector" value="history"/>
            <param name="ref_file" ftype="fasta" value="ref_genome.fasta"/>
            <param name="amr_feature_hits">
                <collection type="list">
                    <element name="amr_pima_md.bed" value="amr_pima_md.bed"/>
                </collection>
            </param>
            <param name="amr_gene_drug_file" value="amr_gene_drug.tsv" ftype="tsv"/>
            <output_collection name="amr_matrix_png" type="list" count="1">
                <element name="contig_1" ftype="png">
                    <assert_contents>
                        <has_size value="25383" delta="100"/>
                    </assert_contents>
                </element>
            </output_collection>
            <output name="errors" value="errors.txt" ftype="txt"/>
        </test>

11:da1c9c1be421

        <test>
            <param name="reference_source_selector" value="history"/>
            <param name="ref_file" ftype="fasta" value="ref_genome.fasta"/>
            <param name="amr_feature_hits">
                <collection type="list">
                    <element name="amr_pima_md" value="amr_pima_md.bed"/>
                </collection>
            </param>
            <param name="varscan_vcf_file" value="varscan.vcf" ftype="vcf"/>
            <param name="amr_mutation_regions_bed_file" value="amr_mutation_regions.bed" ftype="bed"/>
            <param name="amr_gene_drug_file" value="amr_gene_drug.tsv" ftype="tsv"/>
            <output_collection name="amr_matrix_png" type="list" count="1">
                <element name="amr_matrix" ftype="png">
                    <assert_contents>
                        <has_size value="28798" delta="1000"/>
                    </assert_contents>
                </element>
            </output_collection>
            <output name="errors" value="errors.txt" ftype="txt"/>
        </test>