Mercurial > repos > greg > draw_amr_matrix
diff draw_amr_matrix.xml @ 15:487a3c008812 draft
Uploaded
author | greg |
---|---|
date | Mon, 01 May 2023 17:52:05 +0000 |
parents | c5e80637cf3d |
children |
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--- a/draw_amr_matrix.xml Tue Mar 28 13:42:30 2023 +0000 +++ b/draw_amr_matrix.xml Mon May 01 17:52:05 2023 +0000 @@ -39,7 +39,6 @@ --reference_genome reference.fa --amr_matrix_png_dir 'amr_matrix_png_dir' --errors '$errors' ---in_test_mode '$in_test_mode' #if str($output_process_log) == 'yes': && mv 'process_log' '$process_log' #end if @@ -71,7 +70,6 @@ <option value="no" selected="true">No</option> <option value="yes">Yes</option> </param> - <param name="in_test_mode" type="hidden" value="false"/> </inputs> <outputs> <data name="process_log" format="txt" label="${tool.name} on ${on_string} (process log)"> @@ -98,7 +96,6 @@ <param name="varscan_vcf_file" value="varscan.vcf" ftype="vcf"/> <param name="amr_mutation_regions_bed_file" value="amr_mutation_regions.bed" ftype="bed"/> <param name="amr_gene_drug_file" value="amr_gene_drug.tsv" ftype="tsv"/> - <param name="in_test_mode" value="true"/> <output_collection name="amr_matrix_png" type="list" count="1"> <element name="amr_matrix" ftype="png"> <assert_contents>