Mercurial > repos > greg > draw_amr_matrix
diff draw_amr_matrix.xml @ 9:70073df30a06 draft
Uploaded
author | greg |
---|---|
date | Tue, 21 Mar 2023 14:06:11 +0000 |
parents | 389c98d344ce |
children | da1c9c1be421 |
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--- a/draw_amr_matrix.xml Wed Mar 15 13:31:18 2023 +0000 +++ b/draw_amr_matrix.xml Tue Mar 21 14:06:11 2023 +0000 @@ -38,6 +38,7 @@ --amr_gene_drug_file '$amr_gene_drug_file' --reference_genome reference.fa --amr_matrix_png_dir 'amr_matrix_png_dir' +--errors '$errors' #if str($output_process_log) == 'yes': && mv 'process_log' '$process_log' #end if @@ -74,6 +75,7 @@ <data name="process_log" format="txt" label="${tool.name} on ${on_string} (process log)"> <filter>output_process_log == 'yes'</filter> </data> + <data name="errors" format="txt" label="${tool.name} on ${on_string} (errors)"/> <collection name="mutation_regions_tsv" type="list" format="tsv" label="${tool.name} on ${on_string} (mutation regions)"> <filter>amr_mutation_regions_bed_file not in [None, 'None']</filter> <discover_datasets pattern="(?P<designation>.+)\.(?P<ext>tsv)" directory="mutation_regions_dir"/> @@ -99,6 +101,7 @@ </assert_contents> </element> </output_collection> + <output name="errors" value="errors.txt" ftype="txt"/> </test> </tests> <help>