Mercurial > repos > greg > draw_amr_matrix
diff test-data/amr_mutation_regions.bed @ 11:da1c9c1be421 draft
Uploaded
author | greg |
---|---|
date | Mon, 27 Mar 2023 19:41:30 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/amr_mutation_regions.bed Mon Mar 27 19:41:30 2023 +0000 @@ -0,0 +1,44 @@ +#contig start stop name type drug note +chromosome 6843 6862 gyrA QRDR snp quinolone gyrA QRDR mutation is the most common quinolone resistance mutation. It has not been observed in naturally occuring isolates. +chromosome 5664 6166 gyrB QRDR snp quinolone gyrB QRDR mutation is less a less common quinolone resistance mutation. It has not been observed in naturally occuring isolates. +chromosome 124092 124443 rplV any macrolide rplV alteration has been associated with macrolide resistance. +chromosome 3365449 3365459 parC QRDR 1 snp quinolone parC QRDR mutation is less a less common quinolone resistance mutation. It has not been observed in naturally occuring isolates. +chromosome 3365231 3365648 parC QRDR 2 snp quinolone parC QRDR mutation is less a less common quinolone resistance mutation. It has not been observed in naturally occuring isolates. +chromosome 3366159 3366605 parE QRDR snp quinolone parE QRDR mutation is less a less common quinolone resistance mutation. It has not been observed in naturally occuring isolates. +chromosome 842403 842981 tetR any quinolone terR inactivation has been shown to confer quinolone resistance in a lab setting. It has not been observed in natually ocurring isolates. +chromosome 2323274 2323294 rsip poly-A any beta-lactam rsiP inactivation has been shown to confer penicillin resistance in a lab setting. It has not been observed in naturally ocurring isolates. +chromosome 2323269 2324096 rsip broad-gene any beta-lactam rsiP inactivation has been shown to confer penicillin resistance in a lab setting. It has not been observed in naturally ocurring isolates. +chromosome 2421872 2421877 abc-f poly-A indel lincosamide Restoration of the abc-f ORF has been associated with lincosamide resistance in a lab setting. It has not been observed in naturally ocurring isolates. +chromosome 9307 10861 16S.1 point NA NA +chromosome 11230 14158 23S.1 point NA NA +chromosome 14203 14318 5S.1 point NA NA +chromosome 29101 30655 16S.2 point NA NA +chromosome 31024 33952 23S.2 point NA NA +chromosome 33997 34112 5S.2 point NA NA +chromosome 82423 83977 16S.3 point NA NA +chromosome 84119 87047 23S.3 point NA NA +chromosome 87093 87208 5S.3 point NA NA +chromosome 145487 147041 16S.4 point NA NA +chromosome 147183 150111 23S.4 point NA NA +chromosome 150194 150309 5S.4 point NA NA +chromosome 246207 247761 16S.5 point NA NA +chromosome 247903 250831 23S.5 point NA NA +chromosome 250877 250992 5S.5 point NA NA +chromosome 266786 268340 16S.6 point NA NA +chromosome 268482 271410 23S.6 point NA NA +chromosome 271456 271571 5S.6 point NA NA +chromosome 280084 281638 16S.7 point NA NA +chromosome 281780 284708 23S.7 point NA NA +chromosome 284755 284870 5S.7 point NA NA +chromosome 290057 291611 16S.8 point NA NA +chromosome 291753 294681 23S.8 point NA NA +chromosome 294728 294843 5S.8 point NA NA +chromosome 532435 533988 16S.9 point NA NA +chromosome 534123 537051 23S.9 point NA NA +chromosome 537148 537263 5S.9 point NA NA +chromosome 741537 743091 16S.10 point NA NA +chromosome 743233 746161 23S.10 point NA NA +chromosome 746259 746374 5S.10 point NA NA +chromosome 4652034 4652149 5S.11 point NA NA +chromosome 4652247 4655175 23S.11 point NA NA +chromosome 4655317 4656870 16S.11 point NA NA