Mercurial > repos > greg > draw_amr_matrix

changeset 14:c5e80637cf3d draft

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Uploaded
author greg
date Tue, 28 Mar 2023 13:42:30 +0000
parents b1a7e04e6371
children 487a3c008812
files draw_amr_matrix.py draw_amr_matrix.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/draw_amr_matrix.py	Tue Mar 28 13:21:09 2023 +0000
+++ b/draw_amr_matrix.py	Tue Mar 28 13:42:30 2023 +0000
@@ -197,7 +197,7 @@
         # exact inputs when running outside of planeo that result in the value
         # being 2.  So we have to pass this in_test_mode flag in order to get
         # functional tests to work.
-        if in_test_mode:
+        if in_test_mode == 'true':
             shape_val = 0
         else:
             shape_val = 1
--- a/draw_amr_matrix.xml	Tue Mar 28 13:21:09 2023 +0000
+++ b/draw_amr_matrix.xml	Tue Mar 28 13:42:30 2023 +0000
@@ -39,10 +39,10 @@
 --reference_genome reference.fa
 --amr_matrix_png_dir 'amr_matrix_png_dir'
 --errors '$errors'
+--in_test_mode '$in_test_mode'
 #if str($output_process_log) == 'yes':
     && mv 'process_log' '$process_log'
 #end if
---in_test_mode '$in_test_mode'
 ]]></command>
     <inputs>
         <conditional name="reference_source">