comparison draw_features.xml @ 4:3ba596014675 draft

Uploaded

3:60e606b39897

            <option value="no" selected="true">No</option>
            <option value="yes">Yes</option>
        </param>
    </inputs>
    <outputs>
        <data name="process_log" format="txt" label="${tool.name} on ${on_string} (Process log)">
            <filter>output_process_log == 'yes'</filter>
        </data>
        <collection name="features_png" type="list" format="png">
            <discover_datasets pattern="(?P&lt;designation&gt;.+)\.(?P&lt;ext&gt;png)" directory="output_dir"/>
        </collection>
    </outputs>
    <tests>
        <test>

            <param name="feature_hits">
                <collection type="list">
                    <element name="amr_cds.bed" value="amr_cds.bed"/>
                </collection>
            </param>
            <output_collection name="features_png" type="list" count="1">
                <element name="contig_1" ftype="png">
                    <assert_contents>
                        <has_size value="25383" delta="100"/>
                    </assert_contents>

4:3ba596014675

            <option value="no" selected="true">No</option>
            <option value="yes">Yes</option>
        </param>
    </inputs>
    <outputs>
        <data name="process_log" format="txt" label="${tool.name} on ${on_string} (process log)">
            <filter>output_process_log == 'yes'</filter>
        </data>
        <collection name="features_bed" type="list" format="bed" label="${tool.name} on ${on_string} (best bed)">
            <discover_datasets pattern="(?P&lt;designation&gt;.+)\.(?P&lt;ext&gt;bed)" directory="feature_hits_dir"/>
        </collection>
        <collection name="features_png" type="list" format="png" label="${tool.name} on ${on_string} (png)">
            <discover_datasets pattern="(?P&lt;designation&gt;.+)\.(?P&lt;ext&gt;png)" directory="output_dir"/>
        </collection>
    </outputs>
    <tests>
        <test>

            <param name="feature_hits">
                <collection type="list">
                    <element name="amr_cds.bed" value="amr_cds.bed"/>
                </collection>
            </param>
            <output_collection name="features_bed" type="list" count="1">
                <element name="amr_cds" ftype="bed">
                    <assert_contents>
                        <has_size value="129" delta="10"/>
                    </assert_contents>
                </element>
            </output_collection>
            <output_collection name="features_png" type="list" count="1">
                <element name="contig_1" ftype="png">
                    <assert_contents>
                        <has_size value="25383" delta="100"/>
                    </assert_contents>