comparison draw_features.py @ 8:67520145696f draft default tip

Uploaded

7:c5555f1c8f49

FEATURE_COLORS = [AMR_COLOR, INC_GROUPS_COLOR]
FIGURE_WIDTH = 13


def get_random_color():
    number_of_colors = 16
    colors = ['#%s' % ' '.join([random.choice('0123456789ABCDEF') for j in range(6)]) for i in range(number_of_colors)]
    return random.choice(colors)


def draw_features(feature_hits_files, contigs, output_dir):
    ofh = open('process_log', 'w')
    # Read feature_hits_files.

                # No features.
                continue
            features_to_plot = []
            for i in range(contig_features.shape[0]):
                i = contig_features.iloc[i, :]
                if feature_number <= len(FEATURE_COLORS):
                    color = FEATURE_COLORS[feature_number]
                else:
                    color = get_random_color()
                features_to_plot += [GraphicFeature(start=i[1], end=i[2], label=i[3], strand=1 * i[5], color=color)]
            feature_sets_to_plot[feature_name] = features_to_plot

8:67520145696f

FEATURE_COLORS = [AMR_COLOR, INC_GROUPS_COLOR]
FIGURE_WIDTH = 13


def get_random_color():
    r = lambda: random.randint(0,255)
    return '#%02X%02X%02X' % (r(),r(),r())


def draw_features(feature_hits_files, contigs, output_dir):
    ofh = open('process_log', 'w')
    # Read feature_hits_files.

                # No features.
                continue
            features_to_plot = []
            for i in range(contig_features.shape[0]):
                i = contig_features.iloc[i, :]
                if feature_number < len(FEATURE_COLORS):
                    color = FEATURE_COLORS[feature_number]
                else:
                    color = get_random_color()
                features_to_plot += [GraphicFeature(start=i[1], end=i[2], label=i[3], strand=1 * i[5], color=color)]
            feature_sets_to_plot[feature_name] = features_to_plot