comparison insect_phenology_model.xml @ 14:4aadc28100b0 draft

Uploaded

13:8f7d918586bc

    <description>expressing stage-specific phenology and population dynamics</description>
    <requirements>
        <requirement type="package" version="1.4.4">r-optparse</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
#set life_stages_nymph = "None"
#set life_stages_adult = "None"
#set stages = list()
#set plot_adult_life_stage = $plot_adult_life_stage_cond.plot_adult_life_stage
#set plot_nymph_life_stage = $plot_nymph_life_stage_cond.plot_nymph_life_stage
#if str($plot_egg_life_stage) == "yes" and str($plot_nymph_life_stage) == "yes" and str($plot_adult_life_stage) == "yes":

--insects_per_replication $insects_per_replication
--life_stages '$stages'
#if str($life_stages_adult) != "None":
    --life_stages_adult $life_stages_adult
#end if
#if str($life_stage_nymph) != "no":
    --life_stage_nymph $life_stage_nymph
#end if
--location '$location'
--max_clutch_size $max_clutch_size
--min_clutch_size $min_clutch_size

 * **Adjustment of maximum clutch size** - adjustment of maximum clutch size
 * **Adjustment of degree-days accumulation (egg->young nymph)** - adjustment of degree-days accumulation (egg->young nymph).
 * **Adjustment of degree-days accumulation (young nymph->old nymph)** - adjustment of degree-days accumulation (young nymph->old nymph).
 * **Adjustment of degree-days accumulation (old nymph->adult)** - adjustment of degree-days accumulation (old nymph->adult).
 * **Plot generations separately** - select "Yes" to plot P, F1 and F2 as separate lines or "no" to pool across generations, resulting in a total for the selected life states.
 * **Select life stages for plotting** - select any combinaton of Egg, Nymph, Adult or "All" for plotting.
 * **Plot standard error** - add standard error lines to plot.

    </help>
    <citations>
        <citation type="doi">10.3389/fphys.2016.00165</citation>
        <citation type="doi">10.1175/JTECH-D-11-00103.1</citation>
        <citation type="doi">10.7289/V5D21VHZ</citation>

14:4aadc28100b0

    <description>expressing stage-specific phenology and population dynamics</description>
    <requirements>
        <requirement type="package" version="1.4.4">r-optparse</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
#set life_stage_nymph = "None"
#set life_stages_adult = "None"
#set stages = list()
#set plot_adult_life_stage = $plot_adult_life_stage_cond.plot_adult_life_stage
#set plot_nymph_life_stage = $plot_nymph_life_stage_cond.plot_nymph_life_stage
#if str($plot_egg_life_stage) == "yes" and str($plot_nymph_life_stage) == "yes" and str($plot_adult_life_stage) == "yes":

--insects_per_replication $insects_per_replication
--life_stages '$stages'
#if str($life_stages_adult) != "None":
    --life_stages_adult $life_stages_adult
#end if
#if str($life_stage_nymph) != "None":
    --life_stage_nymph $life_stage_nymph
#end if
--location '$location'
--max_clutch_size $max_clutch_size
--min_clutch_size $min_clutch_size

 * **Adjustment of maximum clutch size** - adjustment of maximum clutch size
 * **Adjustment of degree-days accumulation (egg->young nymph)** - adjustment of degree-days accumulation (egg->young nymph).
 * **Adjustment of degree-days accumulation (young nymph->old nymph)** - adjustment of degree-days accumulation (young nymph->old nymph).
 * **Adjustment of degree-days accumulation (old nymph->adult)** - adjustment of degree-days accumulation (old nymph->adult).
 * **Plot generations separately** - select "Yes" to plot P, F1 and F2 as separate lines or "no" to pool across generations, resulting in a total for the selected life states.
 * **Plot egg life stage** - select "Yes" to plot the egg life stage.  If all life stages (egg, nymph and adult) are selected for plotting, one output for the total will be produced.
 * **Plot nymph life stage** - select "Yes" to plot the nymph life stage.  If all life stages (egg, nymph and adult) are selected for plotting, one output for the total will be produced.

  * **Select nymph life stage** - select the nymph life stage for plotting.

 * **Plot adult life stage** - select "Yes" to plot the adult life stage.  If all life stages (egg, nymph and adult) are selected for plotting, one output for the total will be produced.

  * **Select adult life stage** - select the adult life stage for plotting.

 * **Plot standard error** - add standard error lines to plot.
    </help>
    <citations>
        <citation type="doi">10.3389/fphys.2016.00165</citation>
        <citation type="doi">10.1175/JTECH-D-11-00103.1</citation>
        <citation type="doi">10.7289/V5D21VHZ</citation>