Mercurial > repos > greg > insect_phenology_model
comparison insect_phenology_model.xml @ 26:93209c167a61 draft
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| author | greg |
|---|---|
| date | Fri, 09 Mar 2018 13:41:31 -0500 |
| parents | 58255c06d24b |
| children | afe6d8bac0c0 |
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| 25:390d89243074 | 26:93209c167a61 |
|---|---|
| 44 --oviposition $oviposition | 44 --oviposition $oviposition |
| 45 --photoperiod $photoperiod | 45 --photoperiod $photoperiod |
| 46 --replications $replications | 46 --replications $replications |
| 47 --plot_generations_separately $plot_generations_separately | 47 --plot_generations_separately $plot_generations_separately |
| 48 --plot_std_error $plot_std_error | 48 --plot_std_error $plot_std_error |
| 49 --young_nymph_accumulation $young_nymph_accumulation]]></command> | 49 --young_nymph_accumulation $young_nymph_accumulation |
| 50 --output '$output']]></command> | |
| 50 <inputs> | 51 <inputs> |
| 51 <param name="input" type="data" format="csv" label="Temperature data" /> | 52 <param name="input" type="data" format="csv" label="Temperature data" /> |
| 52 <param name="location" type="text" value="" optional="false" label="Location" /> | 53 <param name="location" type="text" value="" optional="false" label="Location" /> |
| 53 <param name="insect" type="select" label="Select insect"> | 54 <param name="insect" type="select" label="Select insect"> |
| 54 <option value="BMSB" selected="True">Brown Marmorated Stink Bug</option> | 55 <option value="BMSB" selected="True">Brown Marmorated Stink Bug</option> |
| 106 <option value="yes" selected="True">Yes</option> | 107 <option value="yes" selected="True">Yes</option> |
| 107 <option value="no">No</option> | 108 <option value="no">No</option> |
| 108 </param> | 109 </param> |
| 109 </inputs> | 110 </inputs> |
| 110 <outputs> | 111 <outputs> |
| 111 <collection name="output_collection" type="list" label="${tool.name} ${location}, on ${on_string}"> | 112 <data name="output" format="csv" label="${tool.name} (analyzed data) on ${on_string}"/> |
| 113 <collection name="output_collection" type="list" label="${tool.name} (plots), on ${on_string}"> | |
| 112 <discover_datasets pattern="__name__" directory="output_dir" format="pdf" /> | 114 <discover_datasets pattern="__name__" directory="output_dir" format="pdf" /> |
| 113 </collection> | 115 </collection> |
| 114 </outputs> | 116 </outputs> |
| 115 <tests> | 117 <tests> |
| 116 <test> | 118 <test> |
| 119 <param name="replications" value="2" /> | 121 <param name="replications" value="2" /> |
| 120 <param name="plot_generations_separately" value="no" /> | 122 <param name="plot_generations_separately" value="no" /> |
| 121 <param name="plot_egg_life_stage" value="no" /> | 123 <param name="plot_egg_life_stage" value="no" /> |
| 122 <param name="life_stages_nymph" value="Young" /> | 124 <param name="life_stages_nymph" value="Young" /> |
| 123 <param name="life_stages_adult" value="Pre-vittelogenic" /> | 125 <param name="life_stages_adult" value="Pre-vittelogenic" /> |
| 126 <output name="output" file="output1.csv" ftype="csv"/> | |
| 124 <output_collection name="output_collection" type="list"> | 127 <output_collection name="output_collection" type="list"> |
| 125 <element name="02_young_nymph_pop.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> | 128 <element name="02_young_nymph_pop.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> |
| 126 <element name="05_pre-vittelogenic_adult_pop.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> | 129 <element name="05_pre-vittelogenic_adult_pop.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> |
| 127 </output_collection> | 130 </output_collection> |
| 128 </test> | 131 </test> |
| 132 <!-- | |
| 129 <test> | 133 <test> |
| 130 <param name="input" value="state_college.csv" ftype="csv" /> | 134 <param name="input" value="state_college.csv" ftype="csv" /> |
| 131 <param name="location" value="State College PA" /> | 135 <param name="location" value="State College PA" /> |
| 132 <param name="replications" value="2" /> | 136 <param name="replications" value="2" /> |
| 133 <param name="plot_generations_separately" value="no" /> | 137 <param name="plot_generations_separately" value="no" /> |
| 158 <element name="04_total_nymph_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> | 162 <element name="04_total_nymph_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> |
| 159 <element name="08_total_adult_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> | 163 <element name="08_total_adult_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> |
| 160 <element name="09_total_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> | 164 <element name="09_total_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> |
| 161 </output_collection> | 165 </output_collection> |
| 162 </test> | 166 </test> |
| 167 --> | |
| 163 </tests> | 168 </tests> |
| 164 <help> | 169 <help> |
| 165 **What it does** | 170 **What it does** |
| 166 | 171 |
| 167 Provides an agent-based stochastic model expressing stage-specific phenology and population dynamics for an insect species across geographic regions. | 172 Provides an agent-based stochastic model expressing stage-specific phenology and population dynamics for an insect species across geographic regions. |