Mercurial > repos > greg > insect_phenology_model

comparison insect_phenology_model.xml @ 32:94afb3e484c3 draft

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author greg
date Mon, 19 Mar 2018 11:00:30 -0400
parents 0e49e1d1c5a1
children ef5add7dea47
comparison
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31:ef6aa8c21729 32:94afb3e484c3
117 <option value="yes" selected="True">Yes</option> 117 <option value="yes" selected="True">Yes</option>
118 <option value="no">No</option> 118 <option value="no">No</option>
119 </param> 119 </param>
120 </inputs> 120 </inputs>
121 <outputs> 121 <outputs>
122 <data name="output_p" format="csv" label="${tool.name} (P generation) on ${on_string}"> 122 <data name="output_p" format="csv" label="${tool.name} (P) on ${on_string}">
123 <filter>plot_generations_separately == 'yes'</filter> 123 <filter>plot_generations_separately == 'yes'</filter>
124 </data> 124 </data>
125 <data name="output_f1" format="csv" label="${tool.name} (F1 generation) on ${on_string}"> 125 <data name="output_f1" format="csv" label="${tool.name} (F1) on ${on_string}">
126 <filter>plot_generations_separately == 'yes'</filter> 126 <filter>plot_generations_separately == 'yes'</filter>
127 </data> 127 </data>
128 <data name="output_f2" format="csv" label="${tool.name} (F2 generation) on ${on_string}"> 128 <data name="output_f2" format="csv" label="${tool.name} (F2) on ${on_string}">
129 <filter>plot_generations_separately == 'yes'</filter> 129 <filter>plot_generations_separately == 'yes'</filter>
130 </data> 130 </data>
131 <data name="output_combined" format="csv" label="${tool.name} (combined generations) on ${on_string}"/> 131 <data name="output_combined" format="csv" label="${tool.name} (combined generations) on ${on_string}"/>
132 <collection name="output_collection" type="list" label="${tool.name} (plots), on ${on_string}"> 132 <collection name="output_collection" type="list" label="${tool.name} (plots), on ${on_string}">
133 <discover_datasets pattern="__name__" directory="output_dir" format="pdf" /> 133 <discover_datasets pattern="__name__" directory="output_dir" format="pdf" />
140 <param name="replications" value="2" /> 140 <param name="replications" value="2" />
141 <param name="plot_generations_separately" value="no" /> 141 <param name="plot_generations_separately" value="no" />
142 <param name="plot_egg_life_stage" value="no" /> 142 <param name="plot_egg_life_stage" value="no" />
143 <param name="life_stages_nymph" value="Young" /> 143 <param name="life_stages_nymph" value="Young" />
144 <param name="life_stages_adult" value="Pre-vittelogenic" /> 144 <param name="life_stages_adult" value="Pre-vittelogenic" />
145 <output name="output_combined" file="output1.csv" ftype="csv" compare="contains"/> 145 <output name="output_combined" file="output_combined1.csv" ftype="csv" compare="contains"/>
146 <output_collection name="output_collection" type="list"> 146 <output_collection name="output_collection" type="list">
147 <element name="02_young_nymph_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/> 147 <element name="02_young_nymph_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/>
148 <element name="05_pre-vittelogenic_adult_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/> 148 <element name="05_pre-vittelogenic_adult_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/>
149 </output_collection> 149 </output_collection>
150 </test> 150 </test>
151 <test> 151 <test>
152 <param name="input" value="state_college.csv" ftype="csv" /> 152 <param name="input" value="state_college.csv" ftype="csv" />
153 <param name="location" value="State College PA" /> 153 <param name="location" value="State College PA" />
154 <param name="replications" value="2" /> 154 <param name="replications" value="2" />
155 <param name="plot_generations_separately" value="no" /> 155 <param name="plot_generations_separately" value="no" />
156 <output name="output_combined" file="output2.csv" ftype="csv" compare="contains"/> 156 <output name="output_combined" file="output_combined2.csv" ftype="csv" compare="contains"/>
157 <output_collection name="output_collection" type="list"> 157 <output_collection name="output_collection" type="list">
158 <element name="01_egg_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/> 158 <element name="01_egg_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/>
159 <element name="04_total_nymph_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/> 159 <element name="04_total_nymph_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/>
160 <element name="08_total_adult_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/> 160 <element name="08_total_adult_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/>
161 <element name="09_total_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/> 161 <element name="09_total_pop.pdf" file="plot.pdf" ftype="pdf" compare="contains"/>
166 <param name="location" value="State College PA" /> 166 <param name="location" value="State College PA" />
167 <param name="replications" value="2" /> 167 <param name="replications" value="2" />
168 <param name="plot_egg_life_stage" value="no" /> 168 <param name="plot_egg_life_stage" value="no" />
169 <param name="life_stages_nymph" value="Old" /> 169 <param name="life_stages_nymph" value="Old" />
170 <param name="plot_adult_life_stage" value="no" /> 170 <param name="plot_adult_life_stage" value="no" />
171 <output name="output_combined" file="output3.csv" ftype="csv" compare="contains"/> 171 <output name="output_p" file="output_p_3.csv" ftype="csv" compare="contains"/>
172 <output name="output_f1" file="output_f1_3.csv" ftype="csv" compare="contains"/>
173 <output name="output_f2" file="output_f2_3.csv" ftype="csv" compare="contains"/>
174 <output name="output_combined" file="output_combined3.csv" ftype="csv" compare="contains"/>
172 <output_collection name="output_collection" type="list"> 175 <output_collection name="output_collection" type="list">
173 <element name="03_old_nymph_pop_by_generation.pdf" file="plot.pdf" ftype="pdf" compare="contains"/> 176 <element name="03_old_nymph_pop_by_generation.pdf" file="plot.pdf" ftype="pdf" compare="contains"/>
174 </output_collection> 177 </output_collection>
175 </test> 178 </test>
176 <test> 179 <test>
177 <param name="input" value="state_college.csv" ftype="csv" /> 180 <param name="input" value="state_college.csv" ftype="csv" />
178 <param name="location" value="State College PA" /> 181 <param name="location" value="State College PA" />
179 <param name="replications" value="2" /> 182 <param name="replications" value="2" />
180 <output name="output_combined" file="output4.csv" ftype="csv" compare="contains"/> 183 <output name="output_p" file="output_p_4.csv" ftype="csv" compare="contains"/>
184 <output name="output_f1" file="output_f1_4.csv" ftype="csv" compare="contains"/>
185 <output name="output_f2" file="output_f2_4.csv" ftype="csv" compare="contains"/>
186 <output name="output_combined" file="output_combined4.csv" ftype="csv" compare="contains"/>
181 <output_collection name="output_collection" type="list"> 187 <output_collection name="output_collection" type="list">
182 <element name="01_egg_pop_by_generation.pdf" file="plot.pdf" ftype="pdf" compare="contains"/> 188 <element name="01_egg_pop_by_generation.pdf" file="plot.pdf" ftype="pdf" compare="contains"/>
183 <element name="04_total_nymph_pop_by_generation.pdf" file="plot.pdf" ftype="pdf" compare="contains"/> 189 <element name="04_total_nymph_pop_by_generation.pdf" file="plot.pdf" ftype="pdf" compare="contains"/>
184 <element name="08_total_adult_pop_by_generation.pdf" file="plot.pdf" ftype="pdf" compare="contains"/> 190 <element name="08_total_adult_pop_by_generation.pdf" file="plot.pdf" ftype="pdf" compare="contains"/>
185 <element name="09_total_pop_by_generation.pdf" file="plot.pdf" ftype="pdf" compare="contains"/> 191 <element name="09_total_pop_by_generation.pdf" file="plot.pdf" ftype="pdf" compare="contains"/>