comparison insect_phenology_model.xml @ 44:c61d3d9d44db draft

Uploaded

43:fd3c00392fce

--adult_mortality $adult_mortality
--adult_accumulation $adult_accumulation
--egg_mortality $egg_mortality
#if str($merge_ytd_temperature_data_cond.merge_ytd_temperature_data) == "yes":
    --input_ytd '$merge_ytd_temperature_data_cond.input_ytd'
    --num_days_ytd $input_ytd.metadata.data_lines
#end if
--input_norm '$input_norm'
--insect '$insect'
--insects_per_replication $insects_per_replication
--life_stages '$life_stages'

    --life_stages_adult '$plot_adult_life_stage_cond.life_stages_adult'
#end if
#if str($plot_nymph_life_stage) == "yes":
    --life_stages_nymph '$plot_nymph_life_stage_cond.life_stages_nymph'
#end if
--location '$location'
--max_clutch_size $max_clutch_size
--min_clutch_size $min_clutch_size
--nymph_mortality $nymph_mortality
--old_nymph_accumulation $old_nymph_accumulation
--oviposition $oviposition

            </param>
            <when value="yes">
                <param name="input_ytd" type="data" format="csv" label="Year-to-date temperature data">
                    <validator type="expression" message="Year-to-date temperature data must have 6 columns">value is not None and value.metadata.columns==6</validator>
                </param>
            </when>
            <when value="no"/>
        </conditional>
        <param name="location" type="text" value="" optional="false" label="Location"/>
        <param name="insect" type="select" label="Select insect">
            <option value="BMSB" selected="True">Brown Marmorated Stink Bug</option>
        </param>
        <param name="replications" type="integer" value="10" min="2" label="Number of replications"/>
        <param name="insects_per_replication" type="integer" value="1000" min="1" label="Number of insects with which to start each replication"/>

    </outputs>
    <tests>
        <test>
            <param name="input_norm" value="30_year_normals.csv" ftype="csv"/>
            <param name="merge_ytd_temperature_data" value="no"/>
            <param name="location" value="State College PA"/>
            <param name="replications" value="2"/>
            <param name="plot_generations_separately" value="no"/>
            <param name="plot_egg_life_stage" value="no"/>
            <param name="life_stages_nymph" value="Young"/>
            <param name="life_stages_adult" value="Pre-vittelogenic"/>

44:c61d3d9d44db

--adult_mortality $adult_mortality
--adult_accumulation $adult_accumulation
--egg_mortality $egg_mortality
#if str($merge_ytd_temperature_data_cond.merge_ytd_temperature_data) == "yes":
    --input_ytd '$merge_ytd_temperature_data_cond.input_ytd'
    --location '$merge_ytd_temperature_data_cond.location'
    --num_days_ytd $merge_ytd_temperature_data_cond.input_ytd.metadata.data_lines
#end if
--input_norm '$input_norm'
--insect '$insect'
--insects_per_replication $insects_per_replication
--life_stages '$life_stages'

    --life_stages_adult '$plot_adult_life_stage_cond.life_stages_adult'
#end if
#if str($plot_nymph_life_stage) == "yes":
    --life_stages_nymph '$plot_nymph_life_stage_cond.life_stages_nymph'
#end if
--max_clutch_size $max_clutch_size
--min_clutch_size $min_clutch_size
--nymph_mortality $nymph_mortality
--old_nymph_accumulation $old_nymph_accumulation
--oviposition $oviposition

            </param>
            <when value="yes">
                <param name="input_ytd" type="data" format="csv" label="Year-to-date temperature data">
                    <validator type="expression" message="Year-to-date temperature data must have 6 columns">value is not None and value.metadata.columns==6</validator>
                </param>
                <param name="location" type="text" value="" optional="true" label="Location" help="Enter the location or leave blank to use the station name from 30 year normals data."/>
            </when>
            <when value="no"/>
        </conditional>
        <param name="insect" type="select" label="Select insect">
            <option value="BMSB" selected="True">Brown Marmorated Stink Bug</option>
        </param>
        <param name="replications" type="integer" value="10" min="2" label="Number of replications"/>
        <param name="insects_per_replication" type="integer" value="1000" min="1" label="Number of insects with which to start each replication"/>

    </outputs>
    <tests>
        <test>
            <param name="input_norm" value="30_year_normals.csv" ftype="csv"/>
            <param name="merge_ytd_temperature_data" value="no"/>
            <param name="replications" value="2"/>
            <param name="plot_generations_separately" value="no"/>
            <param name="plot_egg_life_stage" value="no"/>
            <param name="life_stages_nymph" value="Young"/>
            <param name="life_stages_adult" value="Pre-vittelogenic"/>