# HG changeset patch
# User greg
# Date 1533752192 14400
# Node ID 3f827fe31756d977d82e5c0257ec341d03959b16
# Parent  927321ed032230ee545ab50dc1f5a5973679048a
Uploaded

diff -r 927321ed0322 -r 3f827fe31756 insect_phenology_model.R
--- a/insect_phenology_model.R	Tue Aug 07 12:59:06 2018 -0400
+++ b/insect_phenology_model.R	Wed Aug 08 14:16:32 2018 -0400
@@ -564,11 +564,13 @@
 process_vittelogenic_adults = FALSE;
 process_diapausing_adults = FALSE;
 process_total_adults = FALSE;
+process_total = FALSE;
 for (life_stage in life_stages) {
     if (life_stage=="Total") {
         process_eggs = TRUE;
         process_nymphs = TRUE;
         process_adults = TRUE;
+        process_total = TRUE;
     } else if (life_stage=="Egg") {
         process_eggs = TRUE;
     } else if (life_stage=="Nymph") {
@@ -1436,6 +1438,14 @@
         temperature_data_frame_F2 = append_vector(temperature_data_frame_F2, F2_total_adults, "TOTALADULT.F2");
         temperature_data_frame_F2 = append_vector(temperature_data_frame_F2, F2_total_adults.std_error, "TOTALADULT.F2.SE");
     }
+    if (process_total) {
+        temperature_data_frame_P = append_vector(temperature_data_frame_P, P, "ALL.TOTAL.P");
+        temperature_data_frame_P = append_vector(temperature_data_frame_P, P.std_error, "ALL.TOTAL.P.SE");
+        temperature_data_frame_F1 = append_vector(temperature_data_frame_F1, F1, "ALL.TOTAL.F1");
+        temperature_data_frame_F1 = append_vector(temperature_data_frame_F1, F1.std_error, "ALL.TOTAL.F1.SE");
+        temperature_data_frame_F2 = append_vector(temperature_data_frame_F2, F2, "ALL.TOTAL.F2");
+        temperature_data_frame_F2 = append_vector(temperature_data_frame_F2, F2.std_error, "ALL.TOTAL.F2.SE");
+    }
 }
 
 # Save the analyzed data for combined generations.