# HG changeset patch
# User greg
# Date 1520256437 18000
# Node ID 4aadc28100b0a4fbec6bf98de67d5fbc3cc13f1f
# Parent  8f7d918586bc8eb272c71368bf874c01877cae6d
Uploaded

diff -r 8f7d918586bc -r 4aadc28100b0 insect_phenology_model.xml
--- a/insect_phenology_model.xml	Wed Feb 28 13:39:44 2018 -0500
+++ b/insect_phenology_model.xml	Mon Mar 05 08:27:17 2018 -0500
@@ -4,7 +4,7 @@
         <requirement type="package" version="1.4.4">r-optparse</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-#set life_stages_nymph = "None"
+#set life_stage_nymph = "None"
 #set life_stages_adult = "None"
 #set stages = list()
 #set plot_adult_life_stage = $plot_adult_life_stage_cond.plot_adult_life_stage
@@ -39,7 +39,7 @@
 #if str($life_stages_adult) != "None":
     --life_stages_adult $life_stages_adult
 #end if
-#if str($life_stage_nymph) != "no":
+#if str($life_stage_nymph) != "None":
     --life_stage_nymph $life_stage_nymph
 #end if
 --location '$location'
@@ -154,9 +154,16 @@
  * **Adjustment of degree-days accumulation (young nymph->old nymph)** - adjustment of degree-days accumulation (young nymph->old nymph).
  * **Adjustment of degree-days accumulation (old nymph->adult)** - adjustment of degree-days accumulation (old nymph->adult).
  * **Plot generations separately** - select "Yes" to plot P, F1 and F2 as separate lines or "no" to pool across generations, resulting in a total for the selected life states.
- * **Select life stages for plotting** - select any combinaton of Egg, Nymph, Adult or "All" for plotting.
+ * **Plot egg life stage** - select "Yes" to plot the egg life stage.  If all life stages (egg, nymph and adult) are selected for plotting, one output for the total will be produced.
+ * **Plot nymph life stage** - select "Yes" to plot the nymph life stage.  If all life stages (egg, nymph and adult) are selected for plotting, one output for the total will be produced.
+
+  * **Select nymph life stage** - select the nymph life stage for plotting.
+
+ * **Plot adult life stage** - select "Yes" to plot the adult life stage.  If all life stages (egg, nymph and adult) are selected for plotting, one output for the total will be produced.
+
+  * **Select adult life stage** - select the adult life stage for plotting.
+
  * **Plot standard error** - add standard error lines to plot.
-
     </help>
     <citations>
         <citation type="doi">10.3389/fphys.2016.00165</citation>