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annotate test-data/gtdb.tsv @ 4:8fe04662585c draft

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date Tue, 29 Aug 2023 01:23:22 +0000
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1 user_genome classification fastani_reference fastani_reference_radius fastani_taxonomy fastani_ani fastani_af closest_placement_reference closest_placement_radius closest_placement_taxonomy closest_placement_ani closest_placement_af pplacer_taxonomy classification_method note other_related_references(genome_id,species_name,radius,ANI,AF) msa_percent translation_table red_value warnings
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2 medaka_1_7_2 d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis GCF_000742895.1 95.2518 d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis 99.95 0.997 GCF_000742895.1 95.2518 d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__Bacillus_A anthracis 99.95 0.997 d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_001883995.1, s__Bacillus_A paranthracis, 95.3658, 95.26, 0.85; GCF_001884035.1, s__Bacillus_A tropicus, 95.3658, 94.72, 0.886; GCF_001455345.1, s__Bacillus_A thuringiensis_N, 95.0, 94.13, 0.861; GCF_018332475.1, s__Bacillus_A sp018332475, 95.0, 94.09, 0.879; GCF_006494425.1, s__Bacillus_A sp006494425, 95.0, 93.99, 0.86; GCF_001884185.1, s__Bacillus_A albus, 95.0, 93.46, 0.85; GCF_002746455.1, s__Bacillus_A fungorum, 95.0, 93.34, 0.798; GCF_002571225.1, s__Bacillus_A sp002571225, 95.0, 93.33, 0.84; GCF_001583695.1, s__Bacillus_A wiedmannii, 95.0, 93.12, 0.858; GCF_008923725.1, s__Bacillus_A sp008923725, 95.0, 93.0, 0.835; GCF_900094905.1, s__Bacillus_A cereus_AG, 95.0, 92.98, 0.811; GCF_001884045.1, s__Bacillus_A mobilis, 95.0, 92.86, 0.819; GCF_002200015.1, s__Bacillus_A cereus_AZ, 96.9563, 92.11, 0.839; GCF_000007825.1, s__Bacillus_A cereus, 97.0513, 91.75, 0.839; GCF_001595725.1, s__Bacillus_A thuringiensis_K, 96.827, 91.75, 0.863; GCF_006384875.1, s__Bacillus_A bombysepticus, 97.0513, 91.51, 0.84; GCF_000021305.1, s__Bacillus_A thuringiensis_S, 96.4134, 91.45, 0.836; GCF_001884105.1, s__Bacillus_A luti, 95.0, 91.44, 0.861; GCF_002119445.1, s__Bacillus_A thuringiensis, 96.7077, 91.43, 0.852; GCF_002567495.1, s__Bacillus_A cereus_AQ, 95.0, 91.13, 0.805; GCF_000496285.1, s__Bacillus_A toyonensis, 95.0, 91.09, 0.849; GCF_002584985.1, s__Bacillus_A sp002584985, 95.0, 90.71, 0.821; GCF_002577405.1, s__Bacillus_A cereus_AU, 95.0, 90.47, 0.819; GCF_014932895.1, s__Bacillus_A thuringiensis_AA, 95.0, 90.28, 0.773; GCF_002564555.1, s__Bacillus_A cereus_K, 95.0, 90.09, 0.831; GCF_001884135.1, s__Bacillus_A nitratireducens, 95.0, 90.02, 0.815; GCF_002574955.1, s__Bacillus_A cereus_AT, 95.1182, 89.85, 0.791; GCF_001884065.1, s__Bacillus_A proteolyticus, 95.1182, 89.78, 0.8; GCF_002578045.1, s__Bacillus_A cereus_AK, 95.0, 89.66, 0.784; GCF_000832605.1, s__Bacillus_A mycoides, 95.0, 89.61, 0.796; GCA_018966865.1, s__Bacillus_A sp018966865, 95.0, 89.53, 0.822; GCF_000291355.1, s__Bacillus_A cereus_O, 95.0, 89.41, 0.801; GCF_007673305.1, s__Bacillus_A mycoides_C, 95.0, 89.39, 0.758; GCF_001757995.1, s__Bacillus_A mycoides_B, 95.0, 89.13, 0.776; GCF_018742245.1, s__Bacillus_A cereus_U, 95.0, 89.08, 0.772; GCF_015071065.1, s__Bacillus_A cereus_BA, 95.0, 88.96, 0.773; GCF_002975175.1, s__Bacillus_A sp002975175, 95.0, 88.76, 0.759; GCF_001884235.1, s__Bacillus_A paramycoides, 95.0, 88.74, 0.783; GCF_000746925.1, s__Bacillus_A clarus, 95.0, 86.13, 0.711; GCF_002551815.1, s__Bacillus_A sp002551815, 95.0, 83.66, 0.634; GCF_002561295.1, s__Bacillus_A cereus_S, 95.0, 83.57, 0.657; GCF_000299035.1, s__Bacillus_A bingmayongensis, 95.0, 83.42, 0.62; GCF_013314535.1, s__Bacillus_A sp013314535, 95.0, 83.39, 0.603; GCF_001590835.1, s__Bacillus_A gaemokensis, 95.0, 83.32, 0.592; GCF_002559665.1, s__Bacillus_A cereus_AV, 95.0, 83.29, 0.591; GCF_000161455.1, s__Bacillus_A pseudomycoides, 95.0, 83.24, 0.602; GCF_002584535.1, s__Bacillus_A cereus_AW, 95.0, 83.18, 0.608; GCF_000017425.1, s__Bacillus_A cytotoxicus, 95.0, 82.8, 0.653; GCF_002560985.1, s__Bacillus_A sp002560985, 95.0, 81.09, 0.466; GCF_002551005.1, s__Bacillus_A pseudomycoides_C, 95.0, 80.91, 0.47; GCF_000383235.1, s__Bacillus_A sp000383235, 95.0, 80.91, 0.479; GCF_900116295.1, s__Bacillus_A sp900116295, 95.0, 80.86, 0.436; GCA_002582035.1, s__Bacillus_A pseudomycoides_B, 95.0, 80.81, 0.458; GCF_900112415.1, s__Bacillus_A sp900112415, 95.0, 80.79, 0.445; GCF_000712595.1, s__Bacillus_A manliponensis, 95.0, 80.29, 0.432 86.72 11 N/A N/A