Mercurial > repos > greg > lrn_risk
diff test-data/vfdb_output.tsv @ 1:f98c92618a6c draft
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| author | greg |
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| date | Fri, 28 Apr 2023 15:06:29 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/vfdb_output.tsv Fri Apr 28 15:06:29 2023 +0000 @@ -0,0 +1,8 @@ +Gene Contig % Identity % Coverage E-Value Annotation Comparison to Publicly Available Genomes +BAS3109 contig_1 100.000 100.0 0.0 (BAS3109) thiol-activated cytolysin [ALO (VF0534)] [Bacillus anthracis str. Sterne] Gene BAS3109 has been detected in 97.36% of Bacillus_A anthracis genomes (406 of 417 genomes queried) +cya contig_2 99.958 100.0 0.0 (cya) calmodulin sensitive adenylate cyclase edema factor [Anthrax toxin (VF0142)] [Bacillus anthracis str. Sterne] Gene cya has been detected in 50.12% of Bacillus_A anthracis genomes (209 of 417 genomes queried) +inhA contig_1 100.000 100.0 0.0 (inhA) immune inhibitor A metalloprotease [InhA (VF0536)] [Bacillus anthracis str. Sterne] Gene inhA has been detected in 99.76% of Bacillus_A anthracis genomes (416 of 417 genomes queried) +lef contig_2 100.000 100.0 0.0 (lef) anthrax toxin lethal factor precursor [Anthrax toxin (VF0142)] [Bacillus anthracis str. Sterne] Gene lef has been detected in 50.12% of Bacillus_A anthracis genomes (209 of 417 genomes queried) +nheA contig_1 95.780 100.0 0.0 (nheA) non-hemolytic enterotoxin A [Nhe (VF0533)] [Bacillus cereus ATCC 10987] Gene nheA has been detected in 100.0% of Bacillus_A anthracis genomes (417 of 417 genomes queried) +nheB contig_1 95.620 100.08 0.0 (nheB) non-hemolytic enterotoxin B [Nhe (VF0533)] [Bacillus cereus ATCC 10987] Gene nheB has been detected in 100.0% of Bacillus_A anthracis genomes (417 of 417 genomes queried) +pagA contig_2 100.000 100.0 0.0 (pagA) anthrax toxin moiety protective antigen [Anthrax toxin (VF0142)] [Bacillus anthracis str. Sterne] Gene pagA has been detected in 50.84% of Bacillus_A anthracis genomes (212 of 417 genomes queried)