Mercurial > repos > greg > mummer4_dnadiff
diff test-data/report.txt @ 0:491b007eec5d draft default tip
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| author | greg |
|---|---|
| date | Mon, 27 Feb 2023 20:02:43 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/report.txt Mon Feb 27 20:02:43 2023 +0000 @@ -0,0 +1,87 @@ +/tmp/tmpm1aw7z9b/files/6/1/9/dataset_619c747c-cdb5-4d85-adda-e0ec5f7fa2fe.dat /tmp/tmpm1aw7z9b/files/f/e/c/dataset_fec4ecfe-55bb-4ff9-86e1-292952d00dd1.dat +NUCMER + + [REF] [QRY] +[Sequences] +TotalSeqs 1 1 +AlignedSeqs 1(100.0000%) 1(100.0000%) +UnalignedSeqs 0(0.0000%) 0(0.0000%) + +[Bases] +TotalBases 6480 5460 +AlignedBases 670(10.3395%) 663(12.1429%) +UnalignedBases 5810(89.6605%) 4797(87.8571%) + +[Alignments] +1-to-1 2 2 +TotalLength 670 663 +AvgLength 335.0000 331.5000 +AvgIdentity 86.4791 86.4791 + +M-to-M 2 2 +TotalLength 670 663 +AvgLength 335.0000 331.5000 +AvgIdentity 86.4791 86.4791 + +[Feature Estimates] +Breakpoints 4 4 +Relocations 0 0 +Translocations 0 0 +Inversions 0 0 + +Insertions 3 3 +InsertionSum 5810 4797 +InsertionAvg 1936.6667 1599.0000 + +TandemIns 0 0 +TandemInsSum 0 0 +TandemInsAvg 0.0000 0.0000 + +[SNPs] +TotalSNPs 78 78 +TG 2(2.5641%) 5(6.4103%) +TC 9(11.5385%) 28(35.8974%) +TA 2(2.5641%) 2(2.5641%) +GC 6(7.6923%) 6(7.6923%) +GA 5(6.4103%) 2(2.5641%) +GT 5(6.4103%) 2(2.5641%) +CT 28(35.8974%) 9(11.5385%) +CA 5(6.4103%) 6(7.6923%) +CG 6(7.6923%) 6(7.6923%) +AT 2(2.5641%) 2(2.5641%) +AG 2(2.5641%) 5(6.4103%) +AC 6(7.6923%) 5(6.4103%) + +TotalGSNPs 1 1 +TA 0(0.0000%) 0(0.0000%) +TG 0(0.0000%) 0(0.0000%) +TC 0(0.0000%) 0(0.0000%) +AG 0(0.0000%) 0(0.0000%) +AC 1(100.0000%) 0(0.0000%) +AT 0(0.0000%) 0(0.0000%) +GC 0(0.0000%) 0(0.0000%) +GA 0(0.0000%) 0(0.0000%) +GT 0(0.0000%) 0(0.0000%) +CT 0(0.0000%) 0(0.0000%) +CG 0(0.0000%) 0(0.0000%) +CA 0(0.0000%) 1(100.0000%) + +TotalIndels 13 13 +T. 0(0.0000%) 2(15.3846%) +G. 2(15.3846%) 1(7.6923%) +C. 5(38.4615%) 0(0.0000%) +A. 3(23.0769%) 0(0.0000%) +.G 1(7.6923%) 2(15.3846%) +.C 0(0.0000%) 5(38.4615%) +.A 0(0.0000%) 3(23.0769%) +.T 2(15.3846%) 0(0.0000%) + +TotalGIndels 0 0 +T. 0(0.0000%) 0(0.0000%) +A. 0(0.0000%) 0(0.0000%) +G. 0(0.0000%) 0(0.0000%) +C. 0(0.0000%) 0(0.0000%) +.A 0(0.0000%) 0(0.0000%) +.C 0(0.0000%) 0(0.0000%) +.G 0(0.0000%) 0(0.0000%) +.T 0(0.0000%) 0(0.0000%)