comparison pima_report.xml @ 4:428aed51c487 draft

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author greg
date Thu, 09 Mar 2023 16:52:14 +0000
parents 33d9832420c5
children 7177d81eb7cb
comparison
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3:33d9832420c5 4:428aed51c487
92 <inputs> 92 <inputs>
93 <param name="amr_matrices_png" format="png" type="data_collection" collection_type="list" label="Collection of AMR matrix PNG files"/> 93 <param name="amr_matrices_png" format="png" type="data_collection" collection_type="list" label="Collection of AMR matrix PNG files"/>
94 <param name="aligned_sample" type="data" format="bam" label="Aligned sample BAM file"/> 94 <param name="aligned_sample" type="data" format="bam" label="Aligned sample BAM file"/>
95 <param name="amr_deletions_file" type="data" format="bed" label="AMR deletions BED file"/> 95 <param name="amr_deletions_file" type="data" format="bed" label="AMR deletions BED file"/>
96 <param name="assembly_fasta_file" type="data" format="fasta" label="Assembly FASTA file"/> 96 <param name="assembly_fasta_file" type="data" format="fasta" label="Assembly FASTA file"/>
97 <param name="blastn_features" format="bam" type="data_collection" collection_type="list" label="Collection of blastn BAM files"/> 97 <param name="blastn_features" format="tabular" type="data_collection" collection_type="list" label="Collection of blastn tabular files"/>
98 <param name="compute_sequence_length_file" type="data" format="tabular,tsv" label="Compute sequence length tabular file"/> 98 <param name="compute_sequence_length_file" type="data" format="tabular,tsv" label="Compute sequence length tabular file"/>
99 <param name="contig_coverage_file" type="data" format="tabular,tsv" label="Contig coverage tabular file"/> 99 <param name="contig_coverage_file" type="data" format="tabular,tsv" label="Contig coverage tabular file"/>
100 <param name="dnadiff_snps_file" type="data" format="tabular" label="DNAdiff snps tabular file"/> 100 <param name="dnadiff_snps_file" type="data" format="tabular" label="DNAdiff snps tabular file"/>
101 <param name="features_bed" format="bed" type="data_collection" collection_type="list" label="Collection of best feature hits BED files"/> 101 <param name="features_bed" format="bed" type="data_collection" collection_type="list" label="Collection of best feature hits BED files"/>
102 <param name="features_png" format="png" type="data_collection" collection_type="list" label="Collection of best feature hits PNG files"/> 102 <param name="features_png" format="png" type="data_collection" collection_type="list" label="Collection of best feature hits PNG files"/>