Mercurial > repos > greg > pima_report
comparison pima_report.xml @ 23:d89b7d47a85a draft
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author | greg |
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date | Thu, 20 Apr 2023 16:45:57 +0000 |
parents | 667b253329c6 |
children | 4986a7fb2145 |
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22:13a9c8ecd30e | 23:d89b7d47a85a |
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150 <param argument="--read_type" type="select" label="Specify the read type"> | 150 <param argument="--read_type" type="select" label="Specify the read type"> |
151 <option value="ont" selected="true">Long reads - Oxford Nanopore Technologies (ONT)</option> | 151 <option value="ont" selected="true">Long reads - Oxford Nanopore Technologies (ONT)</option> |
152 <option value="illumina">Short reads - Illumina</option> | 152 <option value="illumina">Short reads - Illumina</option> |
153 </param> | 153 </param> |
154 <param name="reference_insertions_file" type="data" format="bed" label="Reference insertions BED file"/> | 154 <param name="reference_insertions_file" type="data" format="bed" label="Reference insertions BED file"/> |
155 <param name="plasmids_file" type="data" format="tsv" label="pChunks plasmids TSV file"/> | 155 <param name="plasmids_file" type="data" format="tsv" optional="true" label="pChunks plasmids TSV file" help="Optional, ignored if not selected"/> |
156 <param name="samtools_pileup_file" type="data" format="pileup" label="Samtools pileup file"/> | 156 <param name="samtools_pileup_file" type="data" format="pileup" label="Samtools pileup file"/> |
157 <param name="varscan_vcf_file" type="data" format="vcf" label="Varscan VCF file"/> | 157 <param name="varscan_vcf_file" type="data" format="vcf" label="Varscan VCF file"/> |
158 </inputs> | 158 </inputs> |
159 <outputs> | 159 <outputs> |
160 <data name="output" format="pdf"/> | 160 <data name="output" format="pdf"/> |