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comparison pima_report.xml @ 23:d89b7d47a85a draft

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author greg
date Thu, 20 Apr 2023 16:45:57 +0000
parents 667b253329c6
children 4986a7fb2145
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22:13a9c8ecd30e 23:d89b7d47a85a
150 <param argument="--read_type" type="select" label="Specify the read type"> 150 <param argument="--read_type" type="select" label="Specify the read type">
151 <option value="ont" selected="true">Long reads - Oxford Nanopore Technologies (ONT)</option> 151 <option value="ont" selected="true">Long reads - Oxford Nanopore Technologies (ONT)</option>
152 <option value="illumina">Short reads - Illumina</option> 152 <option value="illumina">Short reads - Illumina</option>
153 </param> 153 </param>
154 <param name="reference_insertions_file" type="data" format="bed" label="Reference insertions BED file"/> 154 <param name="reference_insertions_file" type="data" format="bed" label="Reference insertions BED file"/>
155 <param name="plasmids_file" type="data" format="tsv" label="pChunks plasmids TSV file"/> 155 <param name="plasmids_file" type="data" format="tsv" optional="true" label="pChunks plasmids TSV file" help="Optional, ignored if not selected"/>
156 <param name="samtools_pileup_file" type="data" format="pileup" label="Samtools pileup file"/> 156 <param name="samtools_pileup_file" type="data" format="pileup" label="Samtools pileup file"/>
157 <param name="varscan_vcf_file" type="data" format="vcf" label="Varscan VCF file"/> 157 <param name="varscan_vcf_file" type="data" format="vcf" label="Varscan VCF file"/>
158 </inputs> 158 </inputs>
159 <outputs> 159 <outputs>
160 <data name="output" format="pdf"/> 160 <data name="output" format="pdf"/>