comparison pima_report.py @ 33:f5a9f1969199 draft default tip

Uploaded

32:163260afc1b1

                    'SNPs',
                    '{:,}'.format(quast_mismatches),
                    'Small indels',
                    '{:,}'.format(quast_indels)
                ]
            except Exception:
                # Likely a high dissimilarity bewteen the sample
                # and the reference, resulting in a failed alignment.
                pass
        self.doc.new_table(columns=2, rows=3, text=Table_1, text_align='left')
        self.doc.new_line('<div style="page-break-after: always;"></div>')
        self.doc.new_line()
        # TODO: self.alignment_notes is not currently populated.
        if len(self.alignment_notes) > 0:
            self.doc.new_header(level=3, title=self.alignment_notes_title)
            for note in self.alignment_notes:
                self.doc.new_line(note)

33:f5a9f1969199

                    'SNPs',
                    '{:,}'.format(quast_mismatches),
                    'Small indels',
                    '{:,}'.format(quast_indels)
                ]
                self.doc.new_table(columns=2, rows=3, text=Table_1, text_align='left')
                self.doc.new_line('<div style="page-break-after: always;"></div>')
                self.doc.new_line()
            except Exception:
                # Likely a high dissimilarity bewteen the sample
                # and the reference, resulting in a failed alignment.
                pass
        # TODO: self.alignment_notes is not currently populated.
        if len(self.alignment_notes) > 0:
            self.doc.new_header(level=3, title=self.alignment_notes_title)
            for note in self.alignment_notes:
                self.doc.new_line(note)