# HG changeset patch
# User greg
# Date 1681410799 0
# Node ID 13a9c8ecd30e03e5a29d65debbc84b7f57a54410
# Parent  667b253329c6185854ffcf07125ca5e8442369aa
Uploaded

diff -r 667b253329c6 -r 13a9c8ecd30e pima_report.py
--- a/pima_report.py	Thu Apr 13 17:13:40 2023 +0000
+++ b/pima_report.py	Thu Apr 13 18:33:19 2023 +0000
@@ -542,6 +542,7 @@
                 contig_title = 'Alignment to %s' % contig
                 self.doc.new_line()
                 self.doc.new_header(level=3, title=contig_title)
+                self.doc.new_line('Blue indicates aligned sequences (to the reference) and yellow indicates missing sequences')
                 self.doc.new_line(self.doc.new_inline_image(text='contig_title', path=os.path.abspath(circos_file)))
                 self.doc.new_line('<div style="page-break-after: always;"></div>')
                 self.doc.new_line()