# HG changeset patch
# User greg
# Date 1680208532 0
# Node ID c509e6819795f53f36df4c8ca7fcab466995f11b
# Parent  e948214a9e3c09c7b925897b2637b19fa7d168db
Uploaded

diff -r e948214a9e3c -r c509e6819795 pima_report.py
--- a/pima_report.py	Wed Mar 22 13:07:22 2023 +0000
+++ b/pima_report.py	Thu Mar 30 20:35:32 2023 +0000
@@ -528,6 +528,7 @@
             for circos_file in self.circos_files:
                 contig = os.path.basename(circos_file)
                 contig_title = 'Alignment to %s' % contig
+                self.doc.new_line('Blue indicates aligned sequences (to the reference) and yellow indicates missing sequences')
                 self.doc.new_line()
                 self.doc.new_header(level=3, title=contig_title)
                 self.doc.new_line(self.doc.new_inline_image(text='contig_title', path=os.path.abspath(circos_file)))