Mercurial > repos > greg > plant_tribes_assembly_post_processor

annotate test-data/transcripts.cleaned.nr.cds @ 7:ade62ce0029b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Tue, 04 Sep 2018 08:49:55 -0400
parents fcc558568020
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
fcc558568020 Uploaded
greg
parents:
diff changeset
1 >contig_1
fcc558568020 Uploaded
greg
parents:
diff changeset
2 NTTAAAAAATTATATGGAGACAAGGAAGATATCCTTGTCCCAGATATTTTCTGGGATTACACGAGTGGAAAGGTGCTAAC
fcc558568020 Uploaded
greg
parents:
diff changeset
3 AATGGAGTGGGTTGAAGGTGTTAAATTAAATGAGCAAGATGCCGTTGAGAGTCAAGGGCTCAGTGTTCTGGATCTGGTGA
fcc558568020 Uploaded
greg
parents:
diff changeset
4 ATACCGGCATACAGTGCAGTCTTCGACAGCTGCTTGAGTACGGCTATTTTCATGCAGATCCTCACCCAGGGAATCTCTTA
fcc558568020 Uploaded
greg
parents:
diff changeset
5 GCTACACCTGACGGGAAGCTTGCTTTTCTTGATTTTGGAATGATGAGTGAGACTCCTGAACAAGCAAGATCGGCCATAAT
fcc558568020 Uploaded
greg
parents:
diff changeset
6 TGGTCATGTTGTACACATGGTTAATCGN
fcc558568020 Uploaded
greg
parents:
diff changeset
7 >contig_10
fcc558568020 Uploaded
greg
parents:
diff changeset
8 ATGGCAGAAGAGAACACCACTACAATGAACCTCGATCTCAATTTGGGCCCCATCAATAACTCAAGCGACGATAGCGAACC
fcc558568020 Uploaded
greg
parents:
diff changeset
9 TTCATCACGCCCTTATACTGATGTCGCAATGAACTTGGAAGATTGGTTAGATAGTCCCGTCCGAGTTCGTGAAGTCGTCC
fcc558568020 Uploaded
greg
parents:
diff changeset
10 GCCACAGAAATCATAGGTGGCGCTCTTTGTGGCGCCAAATCCCAATTCCGCCTGATACGCGAAACCTCGCGCTCGAATTA
fcc558568020 Uploaded
greg
parents:
diff changeset
11 ATCGGCGGCAATGCCCCN
fcc558568020 Uploaded
greg
parents:
diff changeset
12 >contig_2
fcc558568020 Uploaded
greg
parents:
diff changeset
13 NNCCTTTCCAAGGTACCCATCCCATCCAACAACATATATGCTATAAATGATAAGAAGTCCCCGGAAGATGCAGCAGACGA
fcc558568020 Uploaded
greg
parents:
diff changeset
14 CTACGAAAACCGCCTCAAGGAACTCGTCTCCGAAAAAATCATACCCGTTTCAACCATTAGCGGGTTCCCGAAGTTCGACC
fcc558568020 Uploaded
greg
parents:
diff changeset
15 TCATGTTGCTTGGAATGGGGCCCGACGGCCATGTGGCCTCTCTTTTCCCTTCTCACATGCAACGCTATGAGAAGGAGAAA
fcc558568020 Uploaded
greg
parents:
diff changeset
16 TGGGTCACTTTCATAACTGACTCTCCCAAACCGCCTCCGTCGAGAATCACTTTTACGTTTCCGATGATCAACTCGGCTTC
fcc558568020 Uploaded
greg
parents:
diff changeset
17 GGAGATCGCTATGGTGGTTACCGGGGCTGATTTGGCTGGTACAACTAAGATAGCATTGGGTACTACGGGCAATGTTAAGC
fcc558568020 Uploaded
greg
parents:
diff changeset
18 CGGGTGAGACTCCTTTGCCTTGTACTGAAGTTTCGGCTGAGGGAGAGGTTACTTGGTTCTTGGACAAAGATGCTGCTTCA
fcc558568020 Uploaded
greg
parents:
diff changeset
19 CAACTGTTAAATTATGTGCGCTTTGATGAT
fcc558568020 Uploaded
greg
parents:
diff changeset
20 >contig_3
fcc558568020 Uploaded
greg
parents:
diff changeset
21 NNTGTGGATGAAGGAGTTGTTGTTGCTGGCTTGTCAGAGCAGGAGAAGGCATCTGTTTCTGAAATTCTGACAACTGCTAG
fcc558568020 Uploaded
greg
parents:
diff changeset
22 AGCTCATTCAGAAACAATTGAGAACCTTAAGAGAGATCATTCCCAGCAGGTATCCTGTATCGAACAGCACACGAATGATA
fcc558568020 Uploaded
greg
parents:
diff changeset
23 CTTTCAGGCAAAAATACATGGATTACGAGCCTACAGGGTCCACGCCAGTTAGGAGCGAGCCGGATATTCCCAGCAAAGGC
fcc558568020 Uploaded
greg
parents:
diff changeset
24 ACAATAGAGTCACTTCGTGCCATGCCTATAGATGCACTTGAAGAAGAATTTCGAGAAAACCATTCATACGAATCTGCTGT
fcc558568020 Uploaded
greg
parents:
diff changeset
25 TACAGGAAAGGAACTAATGCCGTCTGTTACGACTCGTGCACCATTTTCACAGATCAAC
fcc558568020 Uploaded
greg
parents:
diff changeset
26 >contig_5
fcc558568020 Uploaded
greg
parents:
diff changeset
27 NNCGGTGGTCCGCCACAAACACACGTCAAGCGGGATCCCGCATCCCGCGGGCTCTTCCACGCGGTCGTCCCGGCGCTCGG
fcc558568020 Uploaded
greg
parents:
diff changeset
28 CCCTCTCCGTGACGCACGTCGAGAGGGACGATTTGGCCGATGCCGCGTGATGCCAGGCCCCGACATCATCAAGGAGCACT
fcc558568020 Uploaded
greg
parents:
diff changeset
29 CCGTTGTGCCGACCCTCGCCTTCGATGACGTCCTCGGGCGTCTAGCGAAGTATCGAAGAAGGGCGAGCGGAGCCATGAAT
fcc558568020 Uploaded
greg
parents:
diff changeset
30 CCTGGAGATGCGAGCCAGGTCACGAGAGGCGCGGCAGGCGAGTCTTTGCTCGCTCTCGCACCGTCTGCTCTCGTGCTTGG
fcc558568020 Uploaded
greg
parents:
diff changeset
31 AGAAGAAGGACCGACTGCTGACGTCGAACCGGATGATGGAAGGTTCGAACAAGTCAGATCTGGAAAGGGGCATGGAAAAG
fcc558568020 Uploaded
greg
parents:
diff changeset
32 GCGACACTCTCACN
fcc558568020 Uploaded
greg
parents:
diff changeset
33 >contig_7
fcc558568020 Uploaded
greg
parents:
diff changeset
34 GAGAATGAGTGGTCTGGGGCTGAGTTTTTGAATGAAATGGCGGCAATGATGACTCAAAATAAATCCAATGAAAACGGAAC
fcc558568020 Uploaded
greg
parents:
diff changeset
35 CGGAACTTTTGAAGAACTGCAACAATTGTTCGATGAAATGTTTCAGAGCGACATCGAGTCCTTCAATGGTTGTTCTTCAT
fcc558568020 Uploaded
greg
parents:
diff changeset
36 CATCCAATGAAACATGTAGCAACTCGAACAAGAGGAATTCCATTGAGTCGAGCTCGGCTAATTTCAGACCCGAAAATGGA
fcc558568020 Uploaded
greg
parents:
diff changeset
37 AACGAAAGCGGCGAGATTAGCGGGAAGAAGAATACTAGGAAAGGTAAAGGTGACGNN
fcc558568020 Uploaded
greg
parents:
diff changeset
38 >contig_9
fcc558568020 Uploaded
greg
parents:
diff changeset
39 NNACTTCGGTTAAAGGCAGATGAGGAGGCACAATGTTTGAATCAGATGCAGCGTATCATTTTTGATGAAATTATGGAGCA
fcc558568020 Uploaded
greg
parents:
diff changeset
40 TGTGGAGTTAGAAAAGGGGGGCTTCTATTTCGTATATCGCCCTGGGGGCAACGGAAAGACCTTGTGGTTGGCTATTATCT
fcc558568020 Uploaded
greg
parents:
diff changeset
41 CAAAACTGAGAAGCGAGGGTAGAATAGTTCTCGCAGTGGCTTCATCAGGTATAGCATTGCTTTTGGTTGAGGGTGGTAGA
fcc558568020 Uploaded
greg
parents:
diff changeset
42 ACAGCCCATTCTCGATTTAAAATACCCATAGATGTCAATGAATATAACAATTGTGAAATTAAACAGAACATCTACCTCGC
fcc558568020 Uploaded
greg
parents:
diff changeset
43 TGAACTTATATGTCACACCAATTTGGTCATTTGGGATGAGGCACCTATGACTCAATATTTTGTCTTTGAGGCGGTTGAN