Mercurial > repos > greg > plant_tribes_assembly_post_processor

annotate test-data/assembly.fasta @ 6:c197d5306cd6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Thu, 30 Aug 2018 09:40:24 -0400
parents fcc558568020
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
fcc558568020 Uploaded
greg
parents:
diff changeset
1 >contig_1
fcc558568020 Uploaded
greg
parents:
diff changeset
2 CGATTAACCATGTGTACAACATGACCAATTATGGCCGATCTTGCTTGTTCAGGAGTCTCA
fcc558568020 Uploaded
greg
parents:
diff changeset
3 CTCATCATTCCAAAATCAAGAAAAGCAAGCTTCCCGTCAGGTGTAGCTAAGAGATTCCCT
fcc558568020 Uploaded
greg
parents:
diff changeset
4 GGGTGAGGATCTGCATGAAAATAGCCGTACTCAAGCAGCTGTCGAAGACTGCACTGTATG
fcc558568020 Uploaded
greg
parents:
diff changeset
5 CCGGTATTCACCAGATCCAGAACACTGAGCCCTTGACTCTCAACGGCATCTTGCTCATTT
fcc558568020 Uploaded
greg
parents:
diff changeset
6 AATTTAACACCTTCAACCCACTCCATTGTTAGCACCTTTCCACTCGTGTAATCCCAGAAA
fcc558568020 Uploaded
greg
parents:
diff changeset
7 ATATCTGGGACAAGGATATCTTCCTTGTCTCCATATAATTTTTTAA
fcc558568020 Uploaded
greg
parents:
diff changeset
8 >contig_2
fcc558568020 Uploaded
greg
parents:
diff changeset
9 CCTTTCCAAGGTACCCATCCCATCCAACAACATATATGCTATAAATGATAAGAAGTCCCC
fcc558568020 Uploaded
greg
parents:
diff changeset
10 GGAAGATGCAGCAGACGACTACGAAAACCGCCTCAAGGAACTCGTCTCCGAAAAAATCAT
fcc558568020 Uploaded
greg
parents:
diff changeset
11 ACCCGTTTCAACCATTAGCGGGTTCCCGAAGTTCGACCTCATGTTGCTTGGAATGGGGCC
fcc558568020 Uploaded
greg
parents:
diff changeset
12 CGACGGCCATGTGGCCTCTCTTTTCCCTTCTCACATGCAACGCTATGAGAAGGAGAAATG
fcc558568020 Uploaded
greg
parents:
diff changeset
13 GGTCACTTTCATAACTGACTCTCCCAAACCGCCTCCGTCGAGAATCACTTTTACGTTTCC
fcc558568020 Uploaded
greg
parents:
diff changeset
14 GATGATCAACTCGGCTTCGGAGATCGCTATGGTGGTTACCGGGGCTGATTTGGCTGGTAC
fcc558568020 Uploaded
greg
parents:
diff changeset
15 AACTAAGATAGCATTGGGTACTACGGGCAATGTTAAGCCGGGTGAGACTCCTTTGCCTTG
fcc558568020 Uploaded
greg
parents:
diff changeset
16 TACTGAAGTTTCGGCTGAGGGAGAGGTTACTTGGTTCTTGGACAAAGATGCTGCTTCACA
fcc558568020 Uploaded
greg
parents:
diff changeset
17 ACTGTTAAATTATGTGCGCTTTGATGATTAAAAACACGGGGTAATTGAACTCAAGGGATG
fcc558568020 Uploaded
greg
parents:
diff changeset
18 GTTGAGAATTGTAATATTTCTGTAAGTGTCGGGGGATGGTTGAAATGCTTTTTATTATGA
fcc558568020 Uploaded
greg
parents:
diff changeset
19 AGTGTTAAAATGTAAGATAAA
fcc558568020 Uploaded
greg
parents:
diff changeset
20 >contig_3
fcc558568020 Uploaded
greg
parents:
diff changeset
21 CGGGGGCAAGGTTTACATGAAAGTACATCTACAGGACCTAGATAAGCATCATCACCTGAC
fcc558568020 Uploaded
greg
parents:
diff changeset
22 AAAAAGCCATACATAGTAACACTTGCTAGTTGATCTGTGAAAATGGTGCACGAGTCGTAA
fcc558568020 Uploaded
greg
parents:
diff changeset
23 CAGACGGCATTAGTTCCTTTCCTGTAACAGCAGATTCGTATGAATGGTTTTCTCGAAATT
fcc558568020 Uploaded
greg
parents:
diff changeset
24 CTTCTTCAAGTGCATCTATAGGCATGGCACGAAGTGACTCTATTGTGCCTTTGCTGGGAA
fcc558568020 Uploaded
greg
parents:
diff changeset
25 TATCCGGCTCGCTCCTAACTGGCGTGGACCCTGTAGGCTCGTAATCCATGTATTTTTGCC
fcc558568020 Uploaded
greg
parents:
diff changeset
26 TGAAAGTATCATTCGTGTGCTGTTCGATACAGGATACCTGCTGGGAATGATCTCTCTTAA
fcc558568020 Uploaded
greg
parents:
diff changeset
27 GGTTCTCAATTGTTTCTGAATGAGCTCTAGCAGTTGTCAGAATTTCAGAAACAGATGCCT
fcc558568020 Uploaded
greg
parents:
diff changeset
28 TCTCCTGCTCTGACAAGCCAGCAACAACAACTCCTTCATCCACA
fcc558568020 Uploaded
greg
parents:
diff changeset
29 >contig_4
fcc558568020 Uploaded
greg
parents:
diff changeset
30 CTGACGATGTTCATATTCATGCCACTCTAAATGTATGCCATCCATGTTGAGGAGAAATGC
fcc558568020 Uploaded
greg
parents:
diff changeset
31 TTGTGTAAAGAAGAAACTGGAGTCAAGCGGTCCCGGTTTTACAGTTGAACGTTGCTCTAA
fcc558568020 Uploaded
greg
parents:
diff changeset
32 ATTAGTCAAAGTACCCGACTACCCGCTCATCAAACTGGCGAGCTCGTTTTCCTCGCCGCC
fcc558568020 Uploaded
greg
parents:
diff changeset
33 CTACTCGGTGTCTTGGCGGGGCACATGGGGGTGGCGTGTGGCGTGCGGGGATGCGACAAC
fcc558568020 Uploaded
greg
parents:
diff changeset
34 ATCATAAATTCATAATCGAAGG
fcc558568020 Uploaded
greg
parents:
diff changeset
35 >contig_5
fcc558568020 Uploaded
greg
parents:
diff changeset
36 GTGAGAGTGTCGCCTTTTCCATGCTACCCCTTTCCAGATCTGACTTGTTCGAACCTTCCA
fcc558568020 Uploaded
greg
parents:
diff changeset
37 TCATCCGGTTCGACGTCAGCAGTCGGTCCTTCTTCTCCAAGCACGAGAGCAGACGGTGCG
fcc558568020 Uploaded
greg
parents:
diff changeset
38 AGAGCGAGCAAAGACTCGCCTGCCGCGCCTCTCGTGACCTGGCTCGCATCTCCAGGATTC
fcc558568020 Uploaded
greg
parents:
diff changeset
39 ATGGCTCCTTAGCTCGCCCTTCTTCGATACTTCGCTAGACGCCCGAGGACGTCATCGAAG
fcc558568020 Uploaded
greg
parents:
diff changeset
40 GCGAGGGTCGGCACAACGGAGTGCTCCTTGCATGATGTCGGGGCCTGGCATCACGCGGCA
fcc558568020 Uploaded
greg
parents:
diff changeset
41 TCGGCCAAATCGTCCCTCTCGACGTGCGTCACGGAGAGGGCCGAGCGCCGGGACGACCGC
fcc558568020 Uploaded
greg
parents:
diff changeset
42 GTGGAAGAGCCCGCGGGATGCGGGATCCCGCTTGACGTGTGTTTGTGGCGGACCACCG
fcc558568020 Uploaded
greg
parents:
diff changeset
43 >contig_6
fcc558568020 Uploaded
greg
parents:
diff changeset
44 TATAACAATTCAAAATATTCCTATGAAAACCAAGACCAGAGGCAACACCGGTATAACCAA
fcc558568020 Uploaded
greg
parents:
diff changeset
45 AGCCAGAGGCAATATCCCTTTATTCTTCGGGAACAGAAAAATACACGATATGCTACAGAC
fcc558568020 Uploaded
greg
parents:
diff changeset
46 AAAAAAATAAATCCAAACCATTCTTCTGTGCATAAACATTGTAAAAGTTTATTAGACCGC
fcc558568020 Uploaded
greg
parents:
diff changeset
47 TGTAAAACTCGTAAATGAAATCCCTGGCAATTGAATCTGTTAAACCTGCTCC
fcc558568020 Uploaded
greg
parents:
diff changeset
48 >contig_7
fcc558568020 Uploaded
greg
parents:
diff changeset
49 GAGAATGAGTGGTCTGGGGCTGAGTTTTTGAATGAAATGGCGGCAATGATGACTCAAAAT
fcc558568020 Uploaded
greg
parents:
diff changeset
50 AAATCCAATGAAAACGGAACCGGAACTTTTGAAGAACTGCAACAATTGTTCGATGAAATG
fcc558568020 Uploaded
greg
parents:
diff changeset
51 TTTCAGAGCGACATCGAGTCCTTCAATGGTTGTTCTTCATCATCCAATGAAACATGTAGC
fcc558568020 Uploaded
greg
parents:
diff changeset
52 AACTCGAACAAGAGGAATTCCATTGAGTCGAGCTCGGCTAATTTCAGACCCGAAAATGCG
fcc558568020 Uploaded
greg
parents:
diff changeset
53 AAACGAAAGCGGCGAGATTAGCGGGAAGAAGAATACTAGGAAAGGTAAAGGTGACG
fcc558568020 Uploaded
greg
parents:
diff changeset
54 >contig_8
fcc558568020 Uploaded
greg
parents:
diff changeset
55 TGGCATGAAGTCGGCTCGACTCGTGCCCGCTCGTCTATAGACGAATTGAGCTAGATTCAC
fcc558568020 Uploaded
greg
parents:
diff changeset
56 TCATTCCATGAACTCGACTCGTTCATGAGTCGGCTCGTAGTTGTCCGGACTCGCTCCATG
fcc558568020 Uploaded
greg
parents:
diff changeset
57 GCCAGCTCTACAACAGACTGCCTGTATGTAGATGATTGTATTGATTTGTTCTTCTCTTGT
fcc558568020 Uploaded
greg
parents:
diff changeset
58 TTAAATCCAACCAAATATCAACATGATATTTGCAATTTC
fcc558568020 Uploaded
greg
parents:
diff changeset
59 >contig_9
fcc558568020 Uploaded
greg
parents:
diff changeset
60 ACTTCGGTTAAAGGCAGATGAGGAGGCACAATGTTTGAATCAGATGCAGCGTATCATTTT
fcc558568020 Uploaded
greg
parents:
diff changeset
61 TGATGAAATTATGGAGCATGTGGAGTTAGAAAAGGGGGGCTTCTATTTCGTATATCGCCC
fcc558568020 Uploaded
greg
parents:
diff changeset
62 TGGGGGCAACGGAAAGACCTTGTGGTTGGCTATTATCTCAAAACTGAGAAGCGAGGGTAG
fcc558568020 Uploaded
greg
parents:
diff changeset
63 AATAGTTCTCGCAGTGGCTTCATCAGGTATAGCATTGCTTTTGGTTGAGGGTGGTAGAAC
fcc558568020 Uploaded
greg
parents:
diff changeset
64 AGCCCATTCTCGATTTAAAATACCCATAGATGTCAATGAATATAACAATTGTGAAATTAA
fcc558568020 Uploaded
greg
parents:
diff changeset
65 ACAGAACATCTACCTCGCTGAACTTATATGTCACACCAATTTGGTCATTTGGGATGAGGC
fcc558568020 Uploaded
greg
parents:
diff changeset
66 ACCTATGACTCAATATTTTGTCTTTGAGGCGGTTGA
fcc558568020 Uploaded
greg
parents:
diff changeset
67 >contig_10
fcc558568020 Uploaded
greg
parents:
diff changeset
68 GGGGCATTGCCGCCGATTAATTCGAGCGCGAGGTTTCGCGTATCAGGCGGAATTGGGATT
fcc558568020 Uploaded
greg
parents:
diff changeset
69 TGGCGCCACAAAGAGCGCCACCTATGATTTCTGTGGCGGACGACTTCACGAACTCGGACG
fcc558568020 Uploaded
greg
parents:
diff changeset
70 GGACTATCTAACCAATCTTCCAAGTTCATTGCGACATCAGTATAAGGGCGTGATGAAGGT
fcc558568020 Uploaded
greg
parents:
diff changeset
71 TCGCTATCGTCGCTTGAGTTATTGATGGGGCCCAAATTGAGATCGAGGTTCATTGTAGTG
fcc558568020 Uploaded
greg
parents:
diff changeset
72 GTGTTCTCTTCTGCCATTTGAGAATTTCACAAGTTCTAACAAACGAAAACGCAAATCTTC
fcc558568020 Uploaded
greg
parents:
diff changeset
73 GGGACTAATATGCAGAATTTCCCTAAATAGAAGGGGTTTAAAA