Mercurial > repos > greg > plant_tribes_assembly_post_processor

diff test-data/transcripts_tgf.pep @ 10:4d73965d99a2 draft

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"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/phylogenetics/plant_tribes/assembly_post_processor commit 71ba0e157346927bf42b788f552b95a71556b28a"
author greg
date Wed, 09 Jun 2021 20:26:55 +0000
parents fcc558568020
children
line wrap: on
line diff
--- a/test-data/transcripts_tgf.pep	Thu Jan 10 10:45:23 2019 -0500
+++ b/test-data/transcripts_tgf.pep	Wed Jun 09 20:26:55 2021 +0000
@@ -1,34 +1,34 @@
->Gene.1::contig_1::g.1::m.1 type:internal len:115 gc:universal contig_1:344-3(-)
+>contig_1.p1 type:internal len:115 gc:universal contig_1:344-3(-)
 KKLYGDKEDILVPDIFWDYTSGKVLTMEWVEGVKLNEQDAVESQGLSVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPDGKLAFLDFGMMSETPEQARSAIIGHVVHMVN
->Gene.2::contig_2::g.2::m.2 type:5prime_partial len:170 gc:universal contig_2:2-511(+)
+>contig_2.p1 type:5prime_partial len:170 gc:universal contig_2:2-511(+)
 LSKVPIPSNNIYAINDKKSPEDAADDYENRLKELVSEKIIPVSTISGFPKFDLMLLGMGPDGHVASLFPSHMQRYEKEKWVTFITDSPKPPPSRITFTFPMINSASEIAMVVTGADLAGTTKIALGTTGNVKPGETPLPCTEVSAEGEVTWFLDKDAASQLLNYVRFDD*
->Gene.3::contig_3::g.3::m.3 type:5prime_partial len:126 gc:universal contig_3:463-86(-)
+>contig_3.p1 type:5prime_partial len:126 gc:universal contig_3:463-86(-)
 VDEGVVVAGLSEQEKASVSEILTTARAHSETIENLKRDHSQQVSCIEQHTNDTFRQKYMDYEPTGSTPVRSEPDIPSKGTIESLRAMPIDALEEEFRENHSYESAVTGKELMPSVTTRAPFSQIN*
->Gene.4::contig_9::g.4::m.4 type:internal len:132 gc:universal contig_9:2-394(+)
+>contig_9.p1 type:internal len:132 gc:universal contig_9:2-394(+)
 LRLKADEEAQCLNQMQRIIFDEIMEHVELEKGGFYFVYRPGGNGKTLWLAIISKLRSEGRIVLAVASSGIALLLVEGGRTAHSRFKIPIDVNEYNNCEIKQNIYLAELICHTNLVIWDEAPMTQYFVFEAV
->Gene.5::contig_11::g.5::m.5 type:5prime_partial len:108 gc:universal contig_11:2-325(+)
+>contig_11.p1 type:5prime_partial len:108 gc:universal contig_11:2-325(+)
 IYGKGIQNMRTLWGGVAPESPVVVVGGGVTPESPVVGGIVLGSPAVLLKSDLLQALPPRLLKSALFQNLPSPLLKSGLLHDIPSELLRISRCCCCSRCCSRNSRCGY*
->Gene.6::contig_11::g.6::m.6 type:5prime_partial len:100 gc:universal contig_11:443-144(-)
+>contig_11.p2 type:5prime_partial len:100 gc:universal contig_11:443-144(-)
 AAKVTVAPGSRVAAAGSGVASESPATAEAGVAPGSPAVDFNSHSGSFWSNTDCSSNNGRFGATPTGYHGATPTSTVATGDFGTTPTSGAAVGELGVNPT*
->Gene.7::contig_18::g.7::m.7 type:internal len:143 gc:universal contig_18:426-1(-)
+>contig_18.p1 type:internal len:143 gc:universal contig_18:426-1(-)
 TEVRRWNKQEDWGRKTWKEAKESTLPKIVGEGIYGVGPILAALSSGRRELYALYVQEGLDLSSNSKKKDKKRFERVLKMVEKIGLSKKEVSKHDLNMVVDNRPHQGLLLDASALEMVSIKELDPVSIDGEKCPLWLALDEVT
->Gene.8::contig_20::g.8::m.8 type:internal len:104 gc:universal contig_20:1-309(+)
+>contig_20.p1 type:internal len:104 gc:universal contig_20:1-309(+)
 GLRIDAHGYALQDWQRDLFQLDLVLHDEPSPRTRSILLLPADIVHADACHVDALPHYWIRFAYTVAGHGSRSYPYPCAGHLHWFRHSYPLHVGLVSLDQLLGS
->Gene.9::contig_20::g.9::m.9 type:internal len:103 gc:universal contig_20:2-307(+)
+>contig_20.p2 type:internal len:103 gc:universal contig_20:2-307(+)
 AYASMLTDMPYKIGNAICFNLILYFMTNLRREPGAFFFFLLISFTLTLVMSMLFRTIGSVSRTLSQAMAPAAILILALVIYTGFVIPTRYMLGWSRWINYLD
->Gene.10::contig_20::g.10::m.10 type:internal len:103 gc:universal contig_20:307-2(-)
+>contig_20.p3 type:internal len:103 gc:universal contig_20:307-2(-)
 IQVVDPTRPAQHVAGRNDETSVNDQRKDKDSCGSHGLRQCTRNGSNSAEEHRHDKRQRERYQQEEEECSWFAAKVRHEVQDQVETDRVANLVGHIREHRCVS
->Gene.11::contig_21::g.11::m.11 type:5prime_partial len:168 gc:universal contig_21:519-16(-)
+>contig_21.p1 type:5prime_partial len:168 gc:universal contig_21:519-16(-)
 VSIVNQEPVLFSVSIGENIAYGLPDDYVSKVDVIKAAKAANAHEFIIALPQGYDTLVGERGGLLSGGQRQRVAIARALLKNAPILILDEATSALDAVSERLVQDALNRLMKGRTTLVIAHRLSTVQNADQIALCSDGKISELGTHSELLEQKGLYASLVGTQRLAFE*
->Gene.12::contig_24::g.12::m.12 type:internal len:111 gc:universal contig_24:331-2(-)
+>contig_24.p1 type:internal len:111 gc:universal contig_24:331-2(-)
 KTRELEIEQILLKSKDLESELESKGSMFIKETEALVAENSKLSQELGAFKSELNDIQMKLNVVSSEKDGTVEELTSARKEIEELTQKLASEGQKLQSQISSIMEENNLLN
->Gene.13::contig_29::g.13::m.13 type:3prime_partial len:267 gc:universal contig_29:52-849(+)
+>contig_29.p1 type:3prime_partial len:267 gc:universal contig_29:52-849(+)
 MKKSKLLQNSKDLLSRSFNPAKCKTSLRLAGSRLKLLRNKKEVQLKQMKREIAQLLESGQDQTARIRVEHLIREEKMMAAYDLLDIYCELVVARLPVIESQKNCPIDLKEAIASLVFAAPRCGDVPEFLDARKQFSAKYGKDFTTAATELRPQCGVGRMLVEKLSATAPDVQSKTKILNAIAEEHNVKWEPTSFGENDSAPLNDRLTGPSSFTKEREQYPEPPHFEAVQVQAHPSNNTLHSSPSNSSQQDDRTSVFVETSTFKTPS
->Gene.14::contig_30::g.14::m.14 type:internal len:160 gc:universal contig_30:1-477(+)
+>contig_30.p1 type:internal len:160 gc:universal contig_30:1-477(+)
 KASGLFSSKDSVDSTDSHMENVCSDILSMSINKNQILENGHVHNNRGAAIFELSGAATNVIEDVGLSDVQSDTRLGMASQVCQVDMHEPEGGLLSFKNQRFKDAEVATNITHDYCHVSHLLKHSNVQVPKYISGNGSATVDLNRQTVDRNNNFKVSTSN
->Gene.15::contig_31::g.15::m.15 type:3prime_partial len:263 gc:universal contig_31:787-2(-)
+>contig_31.p1 type:3prime_partial len:263 gc:universal contig_31:787-2(-)
 MTRSRPHIEKLESRVSQDDLLEGTCARTRPLSYDEIMLGRNNKGDAGKEVASGSGVADSASGHGDIEKISNFPEYHRQINEVSERMDVRHTSNDFQKVSCRRKVDSKNDNLVQDKDEKYRESGVKLKSIWEKTEGSKRVREGENERRHYSNRKRDGHLGVDSYNGSNKRQARESYRKGKTSERGRVKSEIDRKQLVNDEGQVHRKRKTERRMSSDSEKEYKRRDERNVMHTERLTNRGSQKSEKENRRKRHNEEDKTKSLST
->Gene.16::contig_33::g.16::m.16 type:internal len:206 gc:universal contig_33:615-1(-)
+>contig_33.p1 type:internal len:206 gc:universal contig_33:615-1(-)
 EEINEVVAFLQNPRAFQEMGARAPRGVLIVGEIGTGKTSLAMAIAAEAKVPLVEVKAQQLEAGLFVGQGASNVRELFQAARDLAPVIIFVEDFDLFAGVRGKDLQTKKLDHESFINQLLVELDGFEKQDGVVLMATTRNLKQIDGALLRPGRMDRIFHLQRLTQAERRKILLLAAKESMDEELIDFVDWQKVAEKTALLRPIELK
->Gene.17::contig_35::g.17::m.17 type:internal len:131 gc:universal contig_35:2-391(+)
+>contig_35.p1 type:internal len:131 gc:universal contig_35:2-391(+)
 IHSLLFHLEIVYLLQIDMSMLYRGISRKDKPRGRQHGLTQQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMSEEEITRMIAEVDKDGSGAIDFDEFCHMMTAKFGERDTKEELTKAFQIIDKDQ