Mercurial > repos > greg > plant_tribes_assembly_post_processor
view test-data/transcripts_tgf.cds @ 7:ade62ce0029b draft
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author | greg |
---|---|
date | Tue, 04 Sep 2018 08:49:55 -0400 |
parents | fcc558568020 |
children | 4d73965d99a2 |
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>Gene.1::contig_1::g.1::m.1 type:internal len:115 contig_1:344-3(-) AAAAAATTATATGGAGACAAGGAAGATATCCTTGTCCCAGATATTTTCTGGGATTACACGAGTGGAAAGGTGCTAACAATGGAGTGGGTTGAAGGTGTTAAATTAAATGAGCAAGATGCCGTTGAGAGTCAAGGGCTCAGTGTTCTGGATCTGGTGAATACCGGCATACAGTGCAGTCTTCGACAGCTGCTTGAGTACGGCTATTTTCATGCAGATCCTCACCCAGGGAATCTCTTAGCTACACCTGACGGGAAGCTTGCTTTTCTTGATTTTGGAATGATGAGTGAGACTCCTGAACAAGCAAGATCGGCCATAATTGGTCATGTTGTACACATGGTTAAT >Gene.2::contig_2::g.2::m.2 type:5prime_partial len:170 contig_2:2-511(+) CTTTCCAAGGTACCCATCCCATCCAACAACATATATGCTATAAATGATAAGAAGTCCCCGGAAGATGCAGCAGACGACTACGAAAACCGCCTCAAGGAACTCGTCTCCGAAAAAATCATACCCGTTTCAACCATTAGCGGGTTCCCGAAGTTCGACCTCATGTTGCTTGGAATGGGGCCCGACGGCCATGTGGCCTCTCTTTTCCCTTCTCACATGCAACGCTATGAGAAGGAGAAATGGGTCACTTTCATAACTGACTCTCCCAAACCGCCTCCGTCGAGAATCACTTTTACGTTTCCGATGATCAACTCGGCTTCGGAGATCGCTATGGTGGTTACCGGGGCTGATTTGGCTGGTACAACTAAGATAGCATTGGGTACTACGGGCAATGTTAAGCCGGGTGAGACTCCTTTGCCTTGTACTGAAGTTTCGGCTGAGGGAGAGGTTACTTGGTTCTTGGACAAAGATGCTGCTTCACAACTGTTAAATTATGTGCGCTTTGATGATTAA >Gene.3::contig_3::g.3::m.3 type:5prime_partial len:126 contig_3:463-86(-) GTGGATGAAGGAGTTGTTGTTGCTGGCTTGTCAGAGCAGGAGAAGGCATCTGTTTCTGAAATTCTGACAACTGCTAGAGCTCATTCAGAAACAATTGAGAACCTTAAGAGAGATCATTCCCAGCAGGTATCCTGTATCGAACAGCACACGAATGATACTTTCAGGCAAAAATACATGGATTACGAGCCTACAGGGTCCACGCCAGTTAGGAGCGAGCCGGATATTCCCAGCAAAGGCACAATAGAGTCACTTCGTGCCATGCCTATAGATGCACTTGAAGAAGAATTTCGAGAAAACCATTCATACGAATCTGCTGTTACAGGAAAGGAACTAATGCCGTCTGTTACGACTCGTGCACCATTTTCACAGATCAACTAG >Gene.4::contig_9::g.4::m.4 type:internal len:132 contig_9:2-394(+) CTTCGGTTAAAGGCAGATGAGGAGGCACAATGTTTGAATCAGATGCAGCGTATCATTTTTGATGAAATTATGGAGCATGTGGAGTTAGAAAAGGGGGGCTTCTATTTCGTATATCGCCCTGGGGGCAACGGAAAGACCTTGTGGTTGGCTATTATCTCAAAACTGAGAAGCGAGGGTAGAATAGTTCTCGCAGTGGCTTCATCAGGTATAGCATTGCTTTTGGTTGAGGGTGGTAGAACAGCCCATTCTCGATTTAAAATACCCATAGATGTCAATGAATATAACAATTGTGAAATTAAACAGAACATCTACCTCGCTGAACTTATATGTCACACCAATTTGGTCATTTGGGATGAGGCACCTATGACTCAATATTTTGTCTTTGAGGCGGTT >Gene.5::contig_11::g.5::m.5 type:5prime_partial len:108 contig_11:2-325(+) ATTTATGGAAAGGGGATTCAAAATATGAGAACACTCTGGGGTGGCGTTGCTCCCGAATCTCCCGTCGTTGTTGTTGGAGGCGGTGTTACTCCAGAATCTCCCGTCGTCGGAGGCATTGTTCTAGGATCTCCCGCAGTGCTGCTTAAGTCGGATTTACTCCAAGCTCTCCCACCGCGGCTCCTGAAGTCGGCGTTGTTCCAAAATCTCCCGTCGCCACTGTTGAAGTCGGGGTTGCTCCATGATATCCCGTCGGAGTTGCTCCGAATCTCCCGTTGTTGCTGCTGCAGTCGGTGTTGCTCCAGAAACTCCCGCTGTGGCTATTGA >Gene.6::contig_11::g.6::m.6 type:5prime_partial len:100 contig_11:443-144(-) GCTGCTAAAGTCACGGTTGCTCCCGGATCTCGCGTCGCTGCTGCTGGAAGCGGCGTTGCCTCAGAATCTCCGGCGACTGCTGAAGCCGGCGTTGCCCCAGGATCTCCCGCGGTCGACTTCAATAGCCACAGCGGGAGTTTCTGGAGCAACACCGACTGCAGCAGCAACAACGGGAGATTCGGAGCAACTCCGACGGGATATCATGGAGCAACCCCGACTTCAACAGTGGCGACGGGAGATTTTGGAACAACGCCGACTTCAGGAGCCGCGGTGGGAGAGCTTGGAGTAAATCCGACTTAA >Gene.7::contig_18::g.7::m.7 type:internal len:143 contig_18:426-1(-) ACAGAGGTGAGAAGATGGAACAAGCAGGAAGATTGGGGTAGAAAGACATGGAAAGAAGCTAAGGAATCCACATTGCCGAAAATAGTAGGTGAAGGGATCTATGGAGTTGGTCCCATTTTAGCTGCACTCTCATCCGGGCGAAGAGAACTCTACGCGTTGTACGTTCAGGAAGGTTTGGATTTGAGTAGTAACAGTAAGAAGAAGGACAAGAAACGGTTCGAGAGAGTTTTGAAAATGGTGGAAAAGATTGGATTAAGCAAAAAAGAGGTATCCAAACACGACCTCAACATGGTCGTTGATAATAGGCCTCACCAGGGCTTGCTTCTTGATGCTTCGGCACTTGAAATGGTTAGTATAAAGGAATTAGACCCCGTTTCCATTGATGGAGAGAAGTGCCCGCTTTGGTTGGCATTGGATGAGGTTACC >Gene.8::contig_20::g.8::m.8 type:internal len:104 contig_20:1-309(+) GGCTTACGCATCGATGCTCACGGATATGCCCTACAAGATTGGCAACGCGATCTGTTTCAACTTGATCTTGTACTTCATGACGAACCTTCGCCGCGAACCAGGAGCATTCTTCTTCTTCCTGCTGATATCGTTCACGCTGACGCTTGTCATGTCGATGCTCTTCCGCACTATTGGATCCGTTTCGCGTACACTGTCGCAGGCCATGGCTCCCGCAGCTATCCTTATCCTTGCGCTGGTCATTTACACTGGTTTCGTCATTCCTACCCGCTACATGTTGGGCTGGTCTCGTTGGATCAACTACTTGGATCA >Gene.9::contig_20::g.9::m.9 type:internal len:103 contig_20:2-307(+) GCTTACGCATCGATGCTCACGGATATGCCCTACAAGATTGGCAACGCGATCTGTTTCAACTTGATCTTGTACTTCATGACGAACCTTCGCCGCGAACCAGGAGCATTCTTCTTCTTCCTGCTGATATCGTTCACGCTGACGCTTGTCATGTCGATGCTCTTCCGCACTATTGGATCCGTTTCGCGTACACTGTCGCAGGCCATGGCTCCCGCAGCTATCCTTATCCTTGCGCTGGTCATTTACACTGGTTTCGTCATTCCTACCCGCTACATGTTGGGCTGGTCTCGTTGGATCAACTACTTGGAT >Gene.10::contig_20::g.10::m.10 type:internal len:103 contig_20:307-2(-) ATCCAAGTAGTTGATCCAACGAGACCAGCCCAACATGTAGCGGGTAGGAATGACGAAACCAGTGTAAATGACCAGCGCAAGGATAAGGATAGCTGCGGGAGCCATGGCCTGCGACAGTGTACGCGAAACGGATCCAATAGTGCGGAAGAGCATCGACATGACAAGCGTCAGCGTGAACGATATCAGCAGGAAGAAGAAGAATGCTCCTGGTTCGCGGCGAAGGTTCGTCATGAAGTACAAGATCAAGTTGAAACAGATCGCGTTGCCAATCTTGTAGGGCATATCCGTGAGCATCGATGCGTAAGC >Gene.11::contig_21::g.11::m.11 type:5prime_partial len:168 contig_21:519-16(-) GTTTCCATAGTGAATCAGGAACCTGTTCTATTCTCGGTTTCCATTGGAGAAAATATTGCTTACGGACTCCCAGATGATTATGTTTCCAAGGTCGATGTGATAAAAGCTGCTAAAGCAGCTAATGCTCATGAATTTATCATTGCGTTGCCACAGGGTTATGACACATTAGTTGGTGAGCGTGGTGGGTTGTTAAGTGGAGGACAAAGACAGAGGGTAGCCATTGCAAGGGCTCTGCTCAAGAATGCTCCAATCTTGATTCTTGATGAGGCTACCAGTGCTTTGGACGCAGTCAGTGAACGTCTGGTTCAGGATGCTTTGAACCGTTTGATGAAAGGAAGAACGACTTTAGTGATTGCTCACAGGCTGAGCACCGTTCAAAATGCTGATCAAATTGCTTTATGCTCTGATGGGAAGATTTCAGAACTGGGGACACACTCTGAGTTGTTAGAGCAAAAGGGTCTTTATGCCTCACTGGTTGGCACCCAAAGACTTGCATTCGAGTGA >Gene.12::contig_24::g.12::m.12 type:internal len:111 contig_24:331-2(-) AAAACCCGTGAATTAGAAATCGAACAAATCTTGTTAAAATCCAAGGATTTGGAAAGCGAATTGGAGAGCAAGGGTAGTATGTTTATAAAGGAGACTGAGGCACTTGTTGCAGAAAACTCGAAACTCAGTCAGGAGTTGGGTGCATTTAAATCCGAGCTAAACGATATACAGATGAAATTGAACGTTGTTTCATCTGAGAAAGACGGCACTGTTGAAGAACTAACTAGTGCAAGAAAAGAAATAGAAGAGCTGACTCAGAAGCTTGCTTCTGAAGGACAAAAGCTGCAGTCTCAGATATCTTCTATAATGGAAGAGAACAATTTACTTAAC >Gene.13::contig_29::g.13::m.13 type:3prime_partial len:267 contig_29:52-849(+) ATGAAGAAATCGAAGCTTCTGCAGAATTCGAAGGACTTACTTTCTAGGAGCTTCAATCCTGCTAAATGCAAAACGTCTCTGAGGCTGGCGGGTTCAAGGTTGAAGCTATTGAGAAACAAGAAAGAGGTGCAACTGAAGCAGATGAAGCGGGAAATAGCACAGTTGCTCGAGTCTGGACAGGATCAGACCGCTCGAATTCGAGTCGAACATCTGATTAGGGAAGAGAAGATGATGGCTGCATATGATCTCCTCGATATATACTGCGAGCTTGTTGTTGCACGTCTTCCAGTAATTGAGTCACAAAAGAATTGCCCCATTGACCTGAAAGAAGCAATTGCAAGTTTAGTATTTGCAGCACCAAGATGTGGAGATGTACCCGAGTTTCTTGATGCAAGGAAGCAATTTTCAGCTAAATATGGAAAAGATTTCACTACTGCAGCCACAGAACTTCGTCCACAGTGCGGTGTAGGCCGCATGTTGGTTGAAAAATTATCTGCAACAGCGCCTGATGTACAGAGCAAAACTAAAATCTTGAATGCAATAGCTGAGGAGCACAATGTTAAATGGGAACCCACATCATTTGGAGAGAACGACTCTGCACCTCTCAATGACCGACTGACTGGACCAAGTTCCTTTACGAAGGAGAGAGAACAGTACCCTGAACCTCCTCATTTTGAAGCTGTACAAGTCCAAGCTCACCCGAGCAACAACACCTTGCATAGCTCGCCATCAAATTCTTCCCAGCAGGATGATAGAACCTCAGTTTTTGTTGAAACTTCTACTTTCAAGACACCATCG >Gene.14::contig_30::g.14::m.14 type:internal len:160 contig_30:1-477(+) AAGGCTAGTGGACTTTTTTCAAGTAAAGATTCTGTTGATTCAACAGATAGCCACATGGAAAATGTATGCTCTGATATTTTATCAATGAGCATCAACAAAAACCAAATTTTAGAGAATGGCCATGTTCATAACAATAGAGGAGCAGCAATATTTGAGTTGTCTGGAGCTGCTACAAATGTAATTGAGGACGTTGGTTTGTCAGATGTCCAGTCTGACACCAGATTGGGAATGGCAAGTCAAGTTTGCCAAGTTGATATGCATGAACCAGAGGGCGGTTTGTTGTCTTTTAAGAACCAAAGATTTAAGGATGCTGAGGTTGCTACCAATATAACACATGATTATTGTCATGTATCTCATCTGTTAAAGCATTCTAACGTTCAAGTTCCTAAGTACATTAGTGGTAATGGTTCAGCCACTGTTGATCTGAATAGGCAGACTGTAGATAGGAATAACAATTTTAAAGTTTCAACATCTAAT >Gene.15::contig_31::g.15::m.15 type:3prime_partial len:263 contig_31:787-2(-) ATGACTAGATCCCGCCCACACATAGAGAAATTAGAAAGTAGAGTGTCTCAGGATGATCTTTTGGAGGGCACTTGTGCAAGAACGAGGCCATTAAGCTATGATGAGATAATGCTCGGAAGAAATAACAAGGGAGATGCAGGTAAAGAAGTTGCCAGTGGCTCTGGAGTGGCTGATAGTGCATCAGGGCATGGTGACATTGAAAAGATTTCTAATTTTCCAGAATACCATCGGCAAATAAATGAGGTTTCTGAACGTATGGATGTTAGACATACTTCAAATGATTTTCAGAAGGTAAGTTGCCGGAGAAAAGTGGATAGTAAGAATGACAATTTAGTCCAGGATAAGGATGAAAAGTATAGGGAAAGTGGTGTCAAGTTAAAGAGTATATGGGAAAAGACTGAAGGCAGCAAGAGAGTGAGAGAAGGAGAAAATGAAAGACGACATTACAGCAACAGAAAAAGAGATGGCCATTTAGGTGTGGATTCATATAATGGATCAAATAAGAGGCAAGCCAGAGAGTCATATAGAAAGGGTAAAACTTCTGAAAGAGGCAGAGTCAAATCCGAAATAGATAGAAAACAGCTTGTTAACGATGAAGGACAGGTCCACAGGAAAAGGAAAACAGAACGGCGAATGAGCAGTGACTCTGAGAAAGAGTACAAAAGAAGAGACGAAAGAAATGTGATGCATACAGAAAGATTAACTAACAGAGGCAGCCAGAAGTCTGAAAAAGAAAACAGACGCAAACGTCATAATGAGGAGGATAAAACTAAAAGCTTGAGTACG >Gene.16::contig_33::g.16::m.16 type:internal len:206 contig_33:615-1(-) GAAGAAATTAATGAAGTTGTGGCATTTCTACAAAATCCTCGTGCATTCCAAGAAATGGGAGCTCGGGCACCTCGGGGTGTTCTTATTGTTGGTGAGATAGGAACAGGTAAAACATCCCTAGCAATGGCTATAGCAGCGGAAGCGAAGGTTCCTTTAGTTGAAGTAAAAGCCCAACAGCTGGAAGCTGGTCTGTTTGTGGGCCAAGGTGCATCAAACGTTAGAGAATTGTTTCAAGCAGCACGGGATCTGGCTCCTGTCATTATATTTGTGGAAGACTTTGACCTCTTTGCTGGTGTCCGCGGGAAGGACCTTCAGACCAAAAAGCTGGATCACGAATCTTTCATCAATCAACTTCTGGTGGAGCTTGATGGGTTTGAGAAACAAGATGGGGTAGTTTTGATGGCTACTACTCGGAATCTTAAACAAATCGATGGGGCTTTACTGCGTCCTGGTAGAATGGATCGAATATTTCATCTTCAGCGACTAACTCAAGCAGAAAGGAGGAAAATCCTTCTTCTTGCTGCAAAAGAATCAATGGATGAAGAGCTCATTGACTTTGTCGATTGGCAAAAGGTTGCTGAAAAGACAGCATTACTTCGCCCTATAGAATTAAAA >Gene.17::contig_35::g.17::m.17 type:internal len:131 contig_35:2-391(+) ATTCACAGCCTTCTCTTTCATCTCGAGATTGTCTACCTTCTGCAGATCGATATGTCGATGCTTTACAGAGGGATATCGAGGAAGGATAAACCTAGAGGACGTCAGCACGGGTTGACTCAACAGAAAAGGCAAGAGATAAAGGAAGCTTTTGAACTGTTTGACACCGATGGATCTGGAACTATTGATGCGAAAGAGTTGAACGTAGCAATGAGGGCTCTCGGTTTTGAAATGTCAGAAGAGGAAATTACGAGAATGATAGCTGAAGTAGACAAAGACGGGAGTGGGGCGATTGACTTTGACGAGTTTTGTCACATGATGACAGCCAAATTCGGAGAAAGGGACACCAAAGAGGAGCTTACCAAGGCTTTTCAGATTATCGACAAAGATCAA