Mercurial > repos > greg > plant_tribes_gene_family_aligner
diff test-data/3722.fna.aln @ 6:3384b6a842b0 draft
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| author | greg |
|---|---|
| date | Mon, 30 Oct 2017 09:52:00 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/3722.fna.aln Mon Oct 30 09:52:00 2017 -0400 @@ -0,0 +1,819 @@ +>gnl_Glyma1.01_PACid_16266208 +---------ATGGCTAATGAA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GGAAAGAAAAGC +AATAACTTCTATTCGATCTTGGGCTTGAGCAAGGAGTGCACTGAATTGGAGCTAAAGAAT +GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCCACCGGG------ +---AATTTAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT +TCT------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG +GGAGTCTACGACAGT------------------------GATGACGACGAAAACGGCATG +GGGGACTTCTTGGACGAAATGTTAACAATGATGAGTCATACCAAATCAAATGAAAATGGA +------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGCTTTTTGAA +GACATGTTTCAAGCGGATATT------GGATTG--------------------------- +---GATGGAGGCCCTTCTCTT--------------------------------------- +------------GCTTCTTCTGATTCCTCAACTTCATCTGCT------------------ +------------------------------------TACATGACTTACAGTGAAAGTTCT +AGT---------------------------TCAAATAAACGCAATTCCTCT---GAGATG +AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCCAGTTAC------ +------------CAGAATTTCTGTTTTGGG---GTGAAC------CAACTCCAAGATATA +AAGAAGGGAAAG---------GGGGGAATTCTAGGAGGAGGAGGTAGAAGTAGACACAGA +AGTGGCAGAAAGCAAAAAATGTTCTAT---GGCCATGATGTT------------------ +------------------------------------------------------------ +>gnl_Glyma1.01_PACid_16266209 +---------ATGGCTAATGAA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GGAAAGAAAAGC +AATAACTTCTATTCGATCTTGGGCTTGAGCAAGGAGTGCACTGAATTGGAGCTAAAGAAT +GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCCACCGGG------ +---AATTTAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT +TCT------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG +GGAGTCTACGACAGT------------------------GATGACGACGAAAACGGCATG +GGGGACTTCTTGGACGAAATGTTAACAATGATGAGTCATACCAAATCAAATGAAAATGGA +------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGCTTTTTGAA +GACATGTTTCAAGCGGATATT------GGATTG--------------------------- +---GATGGAGGCCCTTCTCTT--------------------------------------- +------------GCTTCTTCTGATTCCTCAACTTCATCTGCT------------------ +------------------------------------TACATGACTTACAGTGAAAGTTCT +AGT---------------------------TCAAATAAACGCAATTCCTCT---GAGATG +AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCCAGTTAC------ +------------CAGAATTTCTGTTTTGGG---ACAGGT------GAACCAACTCCAAGA +TATAAAGAAGGG------------------------AAAGGGGGGAATTCTAGGAGGAGG +AGG--------------------------------------------------------- +------------------------------------------------------------ +>gnl_Glyma1.01_PACid_16266210 +---------ATGGCTAATGAA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GGAAAGAAAAGC +AATAACTTCTATTCGATCTTGGGCTTGAGCAAGGAGTGCACTGAATTGGAGCTAAAGAAT +GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCCACCGGG------ +---AATTTAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT +TCT------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG +GGAGTCTACGACAGT------------------------GATGACGACGAAAACGGCATG +GGGGACTTCTTGGACGAAATGTTAACAATGATGAGTCATACCAAATCAAATGAAAATGGA +------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGCTTTTTGAA +GACATGTTTCAAGCGGATATT------GGATTG--------------------------- +---GATGGAGGCCCTTCTCTT--------------------------------------- +------------GCTTCTTCTGATTCCTCAACTTCATCTGCT------------------ +------------------------------------TACATGACTTACAGTGAAAGTTCT +AGT---------------------------TCAAATAAACGCAATTCCTCT---GAGATG +AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCCAGTTAC------ +------------CAGAATTTCTGTTTTGGG---GTCGGT------CATGTAAACTATCAT +TACCAA------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +>gnl_Glyma1.01_PACid_16301083 +---------ATGGCCGATGAA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GGAAACAAAAGC +AATAACTTCTATTCGATCTTGGGGTTGAAGAAGGAGTGCACTGAATTGGAGCTAAAGAAT +GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCGACCGGG------ +---AATTCAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT +TCA------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG +GGAGTCTACGACAGT------------------------GATGACGACGAGAACGGCATG +GGGGACTTCTTGGACGAAATGCTAACAATGATGAGTCAGACCAAATCGAATGAAAACGGA +------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGTTGTTTGAA +GACATGTTTGAAGCAGATATT------GGATTG--------------------------- +---GACGGAGGCCCTTCTCTT--------------------------------------- +------------GCTTCTTCTGATTGCTCAACTTCATCTGCT------------------ +------------------------------------TACATGACTTATAGTGAAAGTTCT +AGT---------------------------TCAAATAAACACAATTCCTCT---GAGATG +AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCTGGTTAC------ +------------CAGAATTTCTGTTTTGGG---GTGAAC------CAACTCCAAGATATA +AAGAAGAAAAAG---------GGGGGAATTCTA---GGAGGAGGTAGAAGTAGACACAGA +AATGGCAGAAAGCAAAATATGTCCTAT---GGCCATGATGTTTCATCGAATGACTACCCT +GGAATTTCCACAAAG--------------------------------------------- +>gnl_Glyma1.01_PACid_16301085 +---------ATGGCCGATGAA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GGAAACAAAAGC +AATAACTTCTATTCGATCTTGGGGTTGAAGAAGGAGTGCACTGAATTGGAGCTAAAGAAT +GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCGACCGGG------ +---AATTCAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT +TCA------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG +GGAGTCTACGACAGT------------------------GATGACGACGAGAACGGCATG +GGGGACTTCTTGGACGAAATGCTAACAATGATGAGTCAGACCAAATCGAATGAAAACGGA +------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGTTGTTTGAA +GACATGTTTGAAGCAGATATT------GGATTG--------------------------- +---GACGGAGGCCCTTCTCTT--------------------------------------- +------------GCTTCTTCTGATTGCTCAACTTCATCTGCT------------------ +------------------------------------TACATGACTTATAGTGAAAGTTCT +AGT---------------------------TCAAATAAACACAATTCCTCT---GAGATG +AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCTGGTTAC------ +------------CAGAATTTCTGTTTTGGG---GTAGGT------CATGTAAACTATCAT +TACCAA------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +>gnl_Glyma1.01_PACid_16301084 +---------ATGGCCGATGAA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GGAAACAAAAGC +AATAACTTCTATTCGATCTTGGGGTTGAAGAAGGAGTGCACTGAATTGGAGCTAAAGAAT +GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCGACCGGG------ +---AATTCAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT +TCA------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG +GGAGTCTACGACAGT------------------------GATGACGACGAGAACGGCATG +GGGGACTTCTTGGACGAAATGCTAACAATGATGAGTCAGACCAAATCGAATGAAAACGGA +------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGTTGTTTGAA +GACATGTTTGAAGCAGATATT------GGATTG--------------------------- +---GACGGAGGCCCTTCTCTT--------------------------------------- +------------GCTTCTTCTGATTGCTCAACTTCATCTGCT------------------ +------------------------------------TACATGACTTATAGTGAAAGTTCT +AGT---------------------------TCAAATAAACACAATTCCTCT---GAGATG +AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCTGGTTAC------ +------------CAGAATTTCTGTTTTGGG---ACAGGT------GAACCAACTCCAAGA +TATAAAGAAGAA------------------------AAAGGGGGGAATTCTAGGAGGAGG +------------------------------------------------------------ +------------------------------------------------------------ +>gnl_Medtr3.5_Medtr8g022310.1 +---------ATGGCTAACGAA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GGAAACAAAAGC +AATGATTTCTATGCAGTTTTGGGATTGAATAAGGAATGCTCTGATTCAGAGCTAAGGAAT +GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGTTGTTCAGCTTCAGGG------ +---AATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTAT +TCT------------------GTTTTATCTGACTCGAACAAGAGATTAATGTACGACGTT +GGAGTTTACGACAGT------------------------GATGATGACGAAAATGGTATG +GGAGACTTTCTGAATGAAATGGTTACAATGATGAGCCAAACTAAATCAAATGAAAATGGA +------GAGGAGAGCTTCGAGGAGTTACAA------------------CAGTTGTTTGAT +GATATGTTTCAAGCGGATATC------GGATTA--------------------------- +---AATGGAAGCACCTCTCTT--------------------------------------- +------------AATGCTTCGGGTTGCTCCACTTCATCGACT------------------ +------------------------------------TTCATGACGTTCAGTGAAAGCTCG +AAT---------------------------TCAAATAAGCGCAATTCCACT---CAAATG +AATTTTGGGAAG---------GCAGAGGATTCTTCTAGTTTTGGTGCAAATTAC------ +------------CAGAACTTCTGTTTTGGG---ATGAAG------CACCTTCAAGAAGAT +GTGGAGAAGGAA------AAAGGGGGAATTCTAGAAGGAGGAGGTAGCAAAAAACAAAGA +AAAGGAAGAAAACAAAAAATTTCATGT---GGACAT---GTTTCCTCTAATGACCATCCT +GGTATTTCTGCTAAT--------------------------------------------- +>gnl_Medtr3.5_Medtr8g022310.2 +---------ATGGCTAACGAA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GGAAACAAAAGC +AATGATTTCTATGCAGTTTTGGGATTGAATAAGGAATGCTCTGATTCAGAGCTAAGGAAT +GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGTTGTTCAGCTTCAGGG------ +---AATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTAT +TCT------------------GTTTTATCTGACTCGAACAAGAGATTAATGTACGACGTT +GGAGTTTACGACAGT------------------------GATGATGACGAAAATGGTATG +GGAGACTTTCTGAATGAAATGGTTACAATGATGAGCCAAACTAAATCAAATGAAAATGGA +------GAGGAGAGCTTCGAGGAGTTACAA------------------CAGTTGTTTGAT +GATATGTTTCAAGCGGATATC------GGATTA--------------------------- +---AATGGAAGCACCTCTCTT--------------------------------------- +------------AATGCTTCGGGTTGCTCCACTTCATCGACT------------------ +------------------------------------TTCATGACGTTCAGTGAAAGCTCG +AAT---------------------------TCAAATAAGCGCAATTCCACT---CAAATG +AATTTTGGGAAG---------GCAGAGGATTCTTCTAGTTTTGGTGCAAATTAC------ +------------CAGAACTTCTGTTTTGGG---GTCAAT------CTTGTAAATTATCAT +TACCAA------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +>gnl_Musac1.0_GSMUA_Achr6T31040_001 +---------ATGGCGGCCGAA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GAGGACAAAAGC +GGCGACTTCTACGCCGTGTTGGGGCTCAGGAAGGAGTGCTCCGAAACCGAGCTGAGGAAT +GCGTACAAGAAGCTTGCCATGAGGTGGCATCCGGATAAGTGCTTGGCTTCGGGA------ +---AATGCTCAAATCGTGGGGGAAGCCAAGGAGAAGTTTCAGGAGATCCAGAAAGCCTAC +TCT------------------GTTCTCTCAGACTCCAATAAGAGATTCCTGTACGATGTG +GGAGTCTACGACAACGAT------------------GATGACAATGACGAAAACGGTATG +GGAGACTTTATAGGGGAGATGTTGGAGATGATGAGCCAAACGAAACCCAATGAGAACAGC +------CAAGATAGCTTCCAGGAGCTGCAG------------------GAGCTGTTTGTG +GAGATGTTCCAGGACGACCTG------GATGCCGGA------------------------ +---TTTGGTGGTTCCATCTTCCAC---GATTGCCCCTGGGCTCAACCG------------ +---------ACCAATGGCCAAGATTGCTGGACTTCATCGGGA------------------ +------------------------------------CTGCACTTTGCTAATGGAAGGAGT +AAG------------------------TGTGGCAACAAGCGGGGCAACTCA---GCTGTG +AACTTGGGAAAG------------GTCAATCTTGAAGAGTTGGAACATGGTACC------ +------------AGCGACTTCTATTTTGGG---CTAAAT------GATGCAGCACAGCCA +TCACAAGGGAAAGGAGGCAGT------------------------AATAACAAGAGAAGG +AATGGAAGAAAGCAAAAGGTTTCATCC---AATCATGATGTCTCATCC------------ +------------------------------------------------------------ +>gnl_Musac1.0_GSMUA_Achr9T18140_001 +---------ATGGCCGCCGGG--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GAGGAAAAGATC +GGCGATTTCTACACGGTGCTGGGGCTCAGGAAGGAGTGCTCGGAGGCGGAGCTGAGGATC +GCGTACAAGAAGCTGGCTATGAGATGGCATCCGGATAAGTGCTCGGCTTCGGGA------ +---AACCATCGAAGGATGGAGGAAGCGAAGGAGAAGTTCCAGGAAATCCAAAAAGCCTAC +TCT------------------GTTCTCTCGGACTCCAGCAAGAGATTTCTGTATGATGTG +GGAATCTACGATAACGAG------------------GATGATAATGACGAAAAAGGAATG +GGGGATTTTATTGGGGAGATAGCTCAGATGATGAGCCAAACGAAATCTGGGGAGAATGGT +------CATGATAGCTTTGAGGAGCTGCAG------------------CGGATGTTCCTG +GATATGTTCCAGGACGACCTG------GACGCCGGA------------------------ +---TTCGGTGATTCTTCCATCCAC---AGTGGCCCCCAAGCTCGGCCA------------ +---------ACCGACGGTCTCAATTGCTCGATGCCATCAGGA------------------ +------------------------------------CTGCAGTTTGCTGATGGAGGGAAC +AAT------------------------GGCAGCAACAAGAGAGGCAACTCG---GAGAAG +------------------------GCAAAGCTGGATGGGTTGGAAAACAGTTCC------ +------------ACTGGCTTCTGCTTCGGG---TTGAAT------GATGCAGGGCAGTCA +TCAAAAGGAAAAGGAAGCGCT------------------------AATAGCAAGAGAAGG +AATGGAAGAAAGCAGAAGGTCTCATCC---AAACATGATGTCTCATCCAGTGAT---GCT +GAGGTCTCATTT------------------------------------------------ +>gnl_Musac1.0_GSMUA_Achr8T23700_001 +---------ATGGCGAGCGAC--------------------------------------- +------------------------------------------------------------ +------------------------------------------------ATGGATGCAAGC +GGCGATTTCTACTCGGTGCTGGGGCTGAAGAAGGAGTGCTCCGAGGCGGAGCTCAGGAAT +GCGTACAAGAAGCTCGCTTTGAAGTGGCATCCCGATAAGTGCTCGGCGTCGGGT------ +---AATGAGATTCGCATGAAGGAAGCGAAGCAGCAGTTCCAGGAGATCCAGAAAGCCTAC +TCT------------------GTTCTCTCCGACTCCAACAAGAGATTTCTGTACGATGTT +GGAGCCTACGACAAAGAC------------------GACGACAAAGACGAAGAGGGGATG +GTGGAGTTTCTTGGGGAGATGGCGCAAATGATGAGGCAAACCAAATGCTGTGGGAGCGGC +------CAGGAGAGCTTCGAGCAGCTGCAG------------------CAGATGTTCGTG +GAGATGTTCCACGACGATCTG------GACGCGGGA------------------------ +---TTC------------------------------------------------------ +------------------------TGCGGCCACTCCTCGGCC------------------ +---------------------------------------------ACCTCGGGCGCGGCG +TCC------------------------TGCGGCAACAAACGGGACAACTCG---GCGATG +GACTCGGGCAAG------------CGGAAGCCGGACGAGTTGGACCCGGCCGCC------ +------------ATTGGGTTCTGCCTCGGG---ACAAAG------GATGCAGGGCAATCC +TCAAAAGGAAGAGGTAGC---------------------------AACAGCAAGAGAAGG +AACAGAAGAAAGCAAAAGGCATCATCC---AAGCATGACAACTCATCTCACAAT---GCT +AAGGTCTCAGCT------------------------------------------------ +>gnl_Musac1.0_GSMUA_AchrUn_randomT02210_001 +---------ATGGAGGGGGAC--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GAGGAGAAGAGC +GGGGATTTCTACGCGGTGCTGGGGCTGAAGAAAGAGGGCTCCATGGCGGAGCTCAAGAAT +GCGTACAAGAAGCTGGCGATGAAGTGGCATCCCGATAAGTGTCCTGCGTCAGGC------ +---AATAAGATACGCATGGATAAAGCGAAGGAGAAGTTCCAGGAGATCCAAAAAGCCTAC +TCT------------------GTTCTCTCCGACTCCAACAAGCGATTCCTGTACGATGTC +GGAGTTTACGACAAAGAC------------------GATGAGGAAGATGAAGAGGGGATG +GGGGACTTCATTGGGGAGATCGCGCAAATGATGAGCCAGTCCAAACCCAGCGGGAGCGGC +------CACGAGAGCTTGGAGGAGCTGCAT------------------CGGCAGGTCGTG +GAGATGTTCCTCGACGAACTG------GACGCCGGAGAT--------------------- +CGCTTCTCCTCGGCCAACCAA--------------------------------------- +------------GGCGCGTCGTCCTGCGACGGCAGGGACGAC------------------ +------------------------------------------------------------ +------------------------GGCGGCGGTAACAAGCGTGGCAACTGG---GCGGTG +GACTGGGGCAAG------------GAGAAGCTGAACGAGTTGGGCCCGGGCACC------ +------------GGCGGGTTCTGCTTCGGG---GTGAGT--------------------- +---------------------------------------------------CGCCGAGTC +CACTCCTTTGATCTTATGATAGACGTA---GTCCACCTCATCCATTCTGATCTG------ +---------------------------------------------------ACTCTGGAA +>gnl_Orysa6.0_PACid_16843526 +---------ATGGCCGACGGGGGA------------------------------------ +------------------------------------------------------------ +---------------GAGAAGTGC---CGGGACGCGGCCGGC---GAGGGCGGCGGCGGC +GGCGACCTGTACGCCGTGCTCGGGCTCAAGAAGGAGTGCTCCGACGCCGACCTCAAGCTC +GCGTACCGGAAGCTCGCCATGAGATGGCATCCGGACAAATGCTCATCCTCCAGC------ +---AGTGCAAAGCACATGGAGGAAGCCAAGGAGAAGTTCCAGGAGATCCAGGGCGCCTAT +TCC------------------GTCCTCTCAGACTCAAACAAGCGGTTCCTCTACGACGTG +GGGGTATATGATGATGACGAC------------AATGACGATGACAACCTGCAGGGGATG +GGGGACTTCATTGGTGAGATGGCCCAGATGATGAGCCAGGCACGGCCAACGAGG------ +------CAGGAGAGCTTTAAAGAACTGCAG------------------CAGCTATTCGTA +GACATGTTCCAAGCTGATCTT------GATTCGGGT------------------------ +---TTCTGCAATGGACCCTCAAAGTGCTACCATACCCAGGCCCAAAGCCAGACTCGAACA +TCCTCAACCTCCCCTTCGATGTCACCGTCTCCACCGCCTCCA------------------ +------------------------------------GTAGCTACTGAGGCAGAATCGCCA +TCA------------------TGTAATGGTATTAATAAGCGTGGTTCATCA---GCAATG +GACTCTGGGAAG---CCTCCAAGAGCCAGCGAAGTCGGTTCTGGACAGAGTCAA------ +------------TCAGGGTTTTGTTTCGGG---AAGAGT------GATGCTAAACAAGCG +GCGAAGACGCGAAGCGGGAACACG---------------------GCCAGCCGGAGGAGG +AACGGCCGGAAGCAGAAGGTGTCGTCG---AAGCACGACGTCTCGTCTGAGGACGAGATG +CCAGGTTCGCAGTGG---------------------------------CACGGCGTGGCC +>gnl_Orysa6.0_PACid_16843528 +---------ATGGCCGACGGGGGA------------------------------------ +------------------------------------------------------------ +---------------GAGAAGTGC---CGGGACGCGGCCGGC---GAGGGCGGCGGCGGC +GGCGACCTGTACGCCGTGCTCGGGCTCAAGAAGGAGTGCTCCGACGCCGACCTCAAGCTC +GCGTACCGGAAGCTCGCCATGAGATGGCATCCGGACAAATGCTCATCCTCCAGC------ +---AGTGCAAAGCACATGGAGGAAGCCAAGGAGAAGTTCCAGGAGATCCAGGGCGCCTAT +TCC------------------GTCCTCTCAGACTCAAACAAGCGGTTCCTCTACGACGTG +GGGGTATATGATGATGACGAC------------AATGACGATGACAACCTGCAGGGGATG +GGGGACTTCATTGGTGAGATGGCCCAGATGATGAGCCAGGCACGGCCAACGAGG------ +------CAGGAGAGCTTTAAAGAACTGCAG------------------CAGCTATTCGTA +GACATGTTCCAAGCTGATCTT------GATTCGGGT------------------------ +---TTCTGCAATGGACCCTCAAAGTGCTACCATACCCAGGCCCAAAGCCAGACTCGAACA +TCCTCAACCTCCCCTTCGATGTCACCGTCTCCACCGCCTCCA------------------ +------------------------------------GTAGCTACTGAGGCAGAATCGCCA +TCA------------------TGTAATGGTATTAATAAGCGTGGTTCATCA---GCAATG +GACTCTGGGAAG---CCTCCAAGAGCCAGCGAAGTCGGTTCTGGACAGAGTCAA------ +------------TCAGGGTTTTGTTTCGGGCAGAAGAGT------GATGCTAAACAAGCG +GCGAAGACGCGAAGCGGGAACACG---------------------GCCAGCCGGAGGAGG +AACGGCCGGAAGCAGAAGGTGTCGTCG---AAGCACGACGTCTCGTCTGAGGACGAGATG +CCAGGTTCGCAGTGG---------------------------------CACGGCGTGGCC +>gnl_Poptr2.2_PACid_18217800 +---------ATGGCAAACGGAGGAGAA--------------------------------- +------------------------------------------------------------ +---------------------------------------------GATAAATGGAAAAGC +AATGACTTATATCAAGTCTTGGGGTTGAATAAGGAATGCACTGATACAGAGCTCAGGAGT +GCTTATAAGAAACTTGCACTGAGATGGCATCCAGATCGATGTTCAGCTTCAGGA------ +---AATTCTAAGTTCGTTGAAGAAGCCAAAAAGAAGTTTCAGGCAATTCAACAGGCCTAT +TCT------------------GTTCTTTCTGACACCAACAAGAGGTTTCTTTACGACGTT +GGTGTTGATGACAGT------------------------GATGACGACGAAAATGGAATG +GGTGATTTTCTGAATGAAATGGCTGTCATGATGAGCCAAACGAAGCCTAGCGAAAACATG +------GAGGAGAGCCTAGAGGAACTGCAA------------------GAATTATTTGAC +GAGATGTTCCAAGAGGATCTG------CATTCG--------------------------- +---TTTGGGATTGACAGTCAG--------------------------------------- +------------GCTGCTCCTTCATGT------CCTCCTTCT------------------ +------------------------------------TATGTATCCTACAGCGAAAGTTCC +AAC------------------------TCAAATAACAAACGTGTTTCTGCT---GATATG +AACTTGGGGAAG---ACTAAAGTGGATGATTCTTCTAGCTTCAACTCTCACTTT------ +------------GAGAAATTCTGTTTAGGG---ACA------------------------ +---------GGTGGAACAGCAGCAACCTTTCAAGAAGGTGAAGGTGGGAGTAAGAGGAGG +AATTCAAGGAGGAGCCAGCGGCAGACG---AAGGCAAGACAAGAAACAAAGAGTTTCTTC +GGGCTA------------------------------------------------------ +>gnl_Poptr2.2_PACid_18234651 +---------ATGGAAAATGGAGGAGAA--------------------------------- +------------------------------------------------------------ +---------------------------------------------GAGAAAGGGAAAAGC +AATGACTTTTATCAGGTTTTGGGGTTGAATAAGGATTGCACTGCCACAGAGCTGAGGAAT +GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGATGTTCAGCTTCGGAA------ +---AATTCCAGGTTCGTTGACGAAGCCAAAAAGAAGTTTCAGACAATTCAACAGGCCTAT +TCT------------------GTTCTTTCTGACACCAACAAGAGGTTTCTTTACGACGTT +GGTGTTTATGACAGT------------------------GAAGACGACGAAAATGGAATG +GGCGGATTTATGAATGAAATGGCTGCTATGATGAGCCAAACAAAGCCCCACGAAAACGTG +------GAGGAGAGCTTTGAGGAATTGCAA------------------GGATTGTTTGAG +GAGATGTTCCAAGAGGATTTG------GATTCG--------------------------- +---TTTGGGATTGCCTGTCAG--------------------------------------- +------------GCTACTACC--------------------------------------- +------------------------------------TGTGTGTCATACAGCGAAAGCTCC +AAC------------------------TCAAATGATAAACGTGTTTCTGTC---GATATG +AACTTGAAGAAG---ACAAAGGTGGATGATTCTTCTGGCTTCAATTCTCACGTC------ +------------GAGAAGTTCTGTTTAGGG---GTA------------------------ +---------AGTGGAACACCAGCAATCTTTCAAGAAGGGGAA---GGGAGTAAGAGGAGG +AGTTCAAGGAGGAACCGGCGG--------------------------------------- +------------------------------------------------------------ +>gnl_Poptr2.2_PACid_18234649 +ATGCTAAGAATGGAAAATGGAGGAGAA--------------------------------- +------------------------------------------------------------ +---------------------------------------------GAGAAAGGGAAAAGC +AATGACTTTTATCAGGTTTTGGGGTTGAATAAGGATTGCACTGCCACAGAGCTGAGGAAT +GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGATGTTCAGCTTCGGAA------ +---AATTCCAGGTTCGTTGACGAAGCCAAAAAGAAGTTTCAGACAATTCAACAGGCCTAT +TCT------------------GTTCTTTCTGACACCAACAAGAGGTTTCTTTACGACGTT +GGTGTTTATGACAGT------------------------GAAGACGACGAAAATGGAATG +GGCGGATTTATGAATGAAATGGCTGCTATGATGAGCCAAACAAAGCCCCACGAAAACGTG +------GAGGAGAGCTTTGAGGAATTGCAA------------------GGATTGTTTGAG +GAGATGTTCCAAGAGGATTTG------GATTCG--------------------------- +---TTTGGGATTGCCTGTCAG--------------------------------------- +------------GCTACTACC--------------------------------------- +------------------------------------TGTGTGTCATACAGCGAAAGCTCC +AAC------------------------TCAAATGATAAACGTGTTTCTGTC---GATATG +AACTTGAAGAAG---ACAAAGGTGGATGATTCTTCTGGCTTCAATTCTCACGTC------ +------------GAGAAGTTCTGTTTAGGG---GTGGAA------CACCAGCAATCTTTC +AAGAAGGGGAAGGGAGTAAGAGGAGGAGTTCAAGGAGGAACC---GGCGGTAGAGAGAGG +AAAGGCAGGAAACAAGAAGTTTCATCT---GGCTATGATGTCTCCTCCCATGAC---CAT +GGTATTTCTGCTTCA--------------------------------------------- +>gnl_Poptr2.2_PACid_18234650 +---------ATGGAAAATGGAGGAGAA--------------------------------- +------------------------------------------------------------ +---------------------------------------------GAGAAAGGGAAAAGC +AATGACTTTTATCAGGTTTTGGGGTTGAATAAGGATTGCACTGCCACAGAGCTGAGGAAT +GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGATGTTCAGCTTCGGAA------ +---AATTCCAGGTTCGTTGACGAAGCCAAAAAGAAGTTTCAGACAATTCAACAGGCCTAT +TCT------------------GTTCTTTCTGACACCAACAAGAGGTTTCTTTACGACGTT +GGTGTTTATGACAGT------------------------GAAGACGACGAAAATGGAATG +GGCGGATTTATGAATGAAATGGCTGCTATGATGAGCCAAACAAAGCCCCACGAAAACGTG +------GAGGAGAGCTTTGAGGAATTGCAA------------------GGATTGTTTGAG +GAGATGTTCCAAGAGGATTTG------GATTCG--------------------------- +---TTTGGGATTGCCTGTCAG--------------------------------------- +------------GCTACTACC--------------------------------------- +------------------------------------TGTGTGTCATACAGCGAAAGCTCC +AAC------------------------TCAAATGATAAACGTGTTTCTGTC---GATATG +AACTTGAAGAAG---ACAAAGGTGGATGATTCTTCTGGCTTCAATTCTCACGTC------ +------------GAGAAGTTCTGTTTAGGG---GTGGAA------CACCAGCAATCTTTC +AAGAAGGGGAAGGGAGTAAGAGGAGGAGTTCAAGGAGGAACC---GGCGGTAGAGAGAGG +AAAGGCAGGAAACAAGAAGTTTCATCT---GGCTATGATGTCTCCTCCCATGAC---CAT +GGTATTTCTGCTTCA--------------------------------------------- +>gnl_Soltu3.4_PGSC0003DMP400016105 +---------ATG------------------------------------------------ +------------------------------------------------------------ +---------------------------------------------------------GGC +AATGATTATTATGCAGTTTTGGGATTGAAAAAGGAATGCACTGAAACAGAGCTTAGGAAT +GCTTATAAGAAGCTTGCACTGAAATGGCACCCAGATCGCTGTTCAGCATCGGGG------ +---AATTCGAAGTTTGTAGATGAAGCAAAGAAGAAATTTCAGGCAATTCAAGAAGCATAT +TCT------------------GTGTTATCGGATGCAAACAAAAGGTTTCTGTACGATGTA +GGAGTTTATGACTCTGGT------------------GATGATGACGACGAAAATGGCATG +GGTGATTTCCTGAATGAAATGGCAGCTATGATGAGCCAAAATAAGTCCAATGAAAATCAG +------GAAGAAACCTTTGAGGAATTGCAG------------------GATATGTTTGAC +GAAATTTTCAATAGTGATAAT------GGGATG--------------------------- +---------TCTTCTTCTTCT--------------------------------------- +------------TCTTCTTCTTCTCGGACTGGAACTCCTTCA------------------ +------------------------------------ATGTGTTCTACTACATCGTCTACA +TCTTCCAGTGAGACC---TTTTTTACCTTTTCCAACAAAAGAAGTTCAGGT---GAAATG +AAGTCGGGTAAA------------------------GGCGATTCTTGCCAATTC------ +------------CAAGGATTTTGTGAAGGG---ACA------------------------ +---------GGTGGAGCATCTGGAAAAAGCAATGAAAGAGAA---CGGAGTCGGAGGAAA +AATTCCAAGAGTGGACGGAAGCAA------------------------------------ +------------------------------------------------------------ +>gnl_Soltu3.4_PGSC0003DMP400016106 +---------ATG------------------------------------------------ +------------------------------------------------------------ +---------------------------------------------------------GGC +AATGATTATTATGCAGTTTTGGGATTGAAAAAGGAATGCACTGAAACAGAGCTTAGGAAT +GCTTATAAGAAGCTTGCACTGAAATGGCACCCAGATCGCTGTTCAGCATCGGGG------ +---AATTCGAAGTTTGTAGATGAAGCAAAGAAGAAATTTCAGGCAATTCAAGAAGCATAT +TCT------------------GTGTTATCGGATGCAAACAAAAGGTTTCTGTACGATGTA +GGAGTTTATGACTCTGGT------------------GATGATGACGACGAAAATGGCATG +GGTGATTTCCTGAATGAAATGGCAGCTATGATGAGCCAAAATAAGTCCAATGAAAATCAG +------GAAGAAACCTTTGAGGAATTGCAG------------------GATATGTTTGAC +GAAATTTTCAATAGTGATAAT------GGGATG--------------------------- +---------TCTTCTTCTTCT--------------------------------------- +------------TCTTCTTCTTCTCGGACTGGAACTCCTTCA------------------ +------------------------------------ATGTGTTCTACTACATCGTCTACA +TCTTCCAGTGAGACC---TTTTTTACCTTTTCCAACAAAAGAAGTTCAGGT---GAAATG +AAGTCGGGTAAA------------------------GGCGATTCTTGCCAATTC------ +------------CAAGGATTTTGTGAAGGG---GTGGAG------CATCTGGAAAAAGCA +ATGAAAGAGAACGGAGTCGGAGGAAAAATTCCAAGAGTGGAC---GGAAGCAATAGGATG +GATGCTAAAAGGCAAAAGGTTCTATCA--------------------------------- +------------------------------------------------------------ +>gnl_Ambtr1.0.27_AmTr_v1.0_scaffold00007.329 +---------ATGGCACCCCGA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GGAGAGAAAGAC +AGTGATTTTTATGCAATTTTAGGGTTGAAGAAGGAGTGCTCTGCTTCAGATCTCAGAAAT +GCGTACAAAAGGCTCGCACTTCGGTGGCATCCAGATAGGTGCTCTGCCTCAGGG------ +---AACACAAAGTTTGTGGAGGAATGCAAGAAAAAGTTCCAGGCCATTCAGCAGGCTTAT +TCC------------------GTGCTCTCGGATGCAAATAAGAGGTTTTTGTACGATGTT +GGAGCATATGGAAGT------------------------GACGATGACGATCAGGGAATG +GGTGAATTTCTTGGGGAGATGGCGGTAATGATGAGCCAGACAAAGCCCAGTGAAAAAGGG +------CCGGAGAGCTTTGAGGATCTACAG------------------AACTTGTTTCAG +GAGATGTTCGAAAGGGATCTG------GACATG--------------------------- +---TTTAAGTCATCGACCTCCCAC------------------------------------ +------------AACAACAACAATGATAACAACAATAATAAT------------------ +------------------------------------CATAGGAGTAGTGACAATAATAAT +TGTAGTAGTGTTCAT---TGTTTTAGTAACACCAACAAGAGGAATTGCTCG---GATATG +AATGCCGGAGAA---GCCTCGGAGGTCGGGCGCTTTGCTTTCTCATGCTATGCGACAGAG +TTCCTGCACAAGCAAACTTTCTCCGTCGGG---GCGGAT------------------GAT +GTGCGATCGGAGTCG------------------------------AGCAACAAGAGACGA +AACGGGAGGAAACAGAAATCCACCTCC---TCTTCAAGGAAAAGT--------------- +------------------------------------------------------------ +>gnl_Aquco1.0_PACid_18141277 +---------ATGGCTAGT------------------------------------------ +------------------------------------------------------------ +------------------------------------------------GAAGAAGAAGCA +AGTGATTTCTATAAAGTTTTGGGATTGAAAAATAACTGTTCTTCCTTGGAGCTCAGGAAC +GCTTATAAGAAGCTTGCACTGAAATGGCATCCGGATCGTTGTGCTGCTTCAGGA------ +---AACTCAAAGTTTGTTGAAGAAGCAAAGAAGAATTTTCAAGCAATACAAGAAGCTTAT +TCT------------------GTTCTTTCAGATGAGCAGAAACGATTTATGTATGACGTT +GGTGTCTACGATAAAGAT------------------GATGATGACGAAAATGAAGATATG +GGCGATTTTTTAGGTGAAATGATGTCTATGATGAAGCAAGAAAATACTAGTGCGGATGGA +------CAACAAAGTTTTGAAGACCTTCAA------------------AACCTATTCCAG +GAAATGGTTCAAAATGACAAA------GAATTT--------------------------- +---TATAATCCAGCCTCTCAA--------------------------------------- +------------AACTCGTCGATATATAATGCTAGTAACAACATGTTCTCCTTCTCTAAT +AACGAGAACTTAAACAATGCTAGCAACAACACATTCTCCTCTTTTTATAATGAGAACCTA +AAC------------------------AGCAGCAACAAGAAAAGTTGCTCA---AGTATG +AGCGCAGAAAAT------ACCAAGGTGGACTTTAACATGGAATCATTGGACTTC------ +------------CGCAGCTTTTCTATTGGG---TTAGAA------GGCGGTACATCATTT +CAAAACTCCAAAGGGAGAGGA------------------------GTAACGGGTAGGCGG +ACAGGAAGGAAACAGAAGGGGTCGTCC---TGTAATGATATGTCTTCCCATGAT---TCT +AAGATTTTGGCG------------------------------------------------ +>gnl_Arath10_AT3G14200.1 +---------ATGGCGTCCAGTAAT------------------------------------ +------------------------------------------------------------ +---------------------------------------------AGCGAGAAGATCAAC +GAGAATCTGTACGCTGTTCTGGGTTTGAAGAAGGAATGTTCTAAGACGGAGCTCCGTTCT +GCTTATAAGAAGCTTGCTCTCAGATGGCATCCAGATCGTTGTTCGTCA------------ +------ATGGAGTTTGTAGAAGAAGCAAAGAAGAAATTTCAGGCAATCCAAGAAGCCTAC +TCT------------------GTTCTGTCTGACTCCAACAAGAGGTTCCTGTATGATGTT +GGTGCTTATAATACTGAT------------------GATGATGATGACCAAAACGGAATG +GGAGATTTCTTGAACGAAATGGCGACTATGATGAATCAATCCAAGCCTAGTGATAATAAC +---ACAGGGGACAGTTTTGAACAACTACAA------------------GATCTGTTTAAT +GAGATGTTTCAAGGAGACGCT------GCAGCA--------------------------- +---TTCCCATCATCA--------------------------------------------- +------------------TCGTCCTGCTCCACTTCAAATTTC------------------ +------------------------------------ACTTCATCTCGTAGTTTTGTATTC +GAT------------------------ACAAATTCTCAGCGGTCATCTTCGTTTGCGACA +AGTTCGATGGGG------ATGAATAATGATCCTTTCGGATATGACCCGAGAGCT------ +------------CATTCCTTCTCTTTAGGG---GTGGAC------CATCAGCAAGAGTTC +AAGAAAGGGAAAAAC------------------------------AATGGCGGAAGAAGA +AACAGGAGAAAGAACAATGTTCCATCGGCTGGTCACGAAACGTCGTCGTCAAACAACTAT +GGAGTCCCCACCTCA--------------------------------------------- +>gnl_Bradi1.2_Bradi3g60090.1 +---------ATGGCCACCGGGGGC------------------------------------ +------------------------------------------------------------ +---------------GACAAGTGCGGCGGAAAGCCGGCGGCC---GCGGGGGTGGGCGGC +GGTGACCTGTACTCTGTGCTGGGCGTCAACAAGGAGTGCTCCGACGCCGACCTCAAGGTC +GCCTACCGGAAGCTCGCCATGAGATGGCATCCGGATAGATGCTCCTCCTCCAGC------ +---AGCACCAAGCACATGGAGGAAGCAAAAGAGAAGTTCCAGGAGATCCAGGGCGCCTAT +TCC------------------GTCCTCTCCGATGCCAACAAGCGCTTCCTCTATGACGTG +GGGGTATATGAAGAACATGAAGAA---------GAAGATGATGACACTCTGCAGGGGATG +GGGGACTTCCTTGGTGAGATGGCCCATATGATGAGCCAGACGCAGCCAGCGAGA------ +------CAGGAAAGCTTTGAGGAGCTCCAG------------------CAGCTCTTCGTG +GACATGTTCCAGTCTGATATT------GAATCGGGA------------------------ +---TTCTGCAACGGACCTGCCAAG---GACCATGACCCAGTCCAAAGACAGACGCGAACA +TTCTCGACCCCTCCTTCGCCATCGCCATCTCCACCGCCTCCA------------------ +------------------------------------CTAGCTACAGTGGACGAAGCGGCA +TCA------------------TGTAATGGCATCAATAAGCGTGGCTCATCA---GCAATG +GGCTCTGGGAAG---CCTCCAAGAGCTGGTGAAGTGAGTGGGGGTCACGGCCAG------ +------------TCTGAGTTCTGTTTCGGG---ATGAGC------GACGCCAAGCAAGCG +CCGAAGGCGCGAGGCGGGAAC------------------------GCTAGCAGGAGAAGG +AACGGCCAGAAGCAGAAACTGTCGTCG---AAGCACGACGTCTCCTCCGGCGATGAGATG +CCGAGACCA---------------------------------------CATGCAGCAGTA +>gnl_Carpa1.181_PACid_16420351 +---------ATGGCGGATGGA--------------------------------------- +------------------------------------------------------------ +---------------------------------------------GAAGACAAGAACAAC +AGTGATTTGTATGCGGTTCTTGGATTGAATAAGGAATGTACTCCAGCAGAGCTCAGGAAC +GCTTATAAGAAACTTGCAATGAGATGGCATCCAGATCGCTGTTCCGCGTCGGGG------ +---AATTCAATGTTTGTGGAAGAAGCAAAGAAGAAATTTCAGGCAATCCAAGAAGCCTAC +TCT------------------GTTCTTTCTGACGCAAACAAGAGGTTTCTGTACGACGTC +GGAGCTTACGAAAGT------------------------GATGACGACGAAAATGGAATG +GGTGATTTTTTAAACGAAATGGCAGCCATGATGAGCCAAACAAAGCCTAATGAGAATGGG +AATGCACAAGAGAGCTTTGAAGAATTGCAA------------------GAGTTGTTTCAA +GAGATGTTTCAAGGGGATATGGGATTCAACACA--------------------------- +---TTTGGATCTAGTTCTCAGCCT------------------------------------ +------------ACTACTTCTTCGTGTTCTGCTTCCTCTGCA------------------ +------------------------------------TATGCAACCTGTAGCGAAACCTCC +AAT---------------------CCTAACAACAACAAGCGCAATTCATCA---GAAATG +AATTATGGCAAG---AAAAAGGTAGATGATTCTTCAGGGTTTCATGCTCATTTC------ +------------CAAACCTTTTGTTTAGGG---GTGGAA------CAGCAGCAAGATTTC +AAGAAGGGGAAGGAAGCAAGAGGAGGAATTCGAGGAAAACCC---GGAGGTAGTAGGAGG +CAGGGAAGGAAACAGAAGGTTTCATCT---CGCCACAATGTCTCATCCAATGAC---TTG +GGCATTTCTGCTTCC--------------------------------------------- +>gnl_Frave2.0_gene05408 +---------ATGGCGGGGGGAAAGTGGGTCCCCCCACCCCTGTCCCAGTTTCATCTTCAC +ATAAAGAGGTTCCGTCGACGTCAGAAAGTCTCTGGATCCAGTGGAAACACAGAACCTTCT +GGATACACAGACTGCAAAAATATCTCCAATCGA---------AGAATGGAAGAGAAAGGC +AATGACTTTTATGCTGTTATGGGGTTGAAGAAGGAATGCTCTGACTCGGAGCTCAGGAAT +GCTTATAAGAAACTTGCACTGATATGGCACCCAGATCGTTGCTCTGCCTCAGGA------ +---AATTCAAAGTTCGTGGAAGAAGCCAAGAAGAAGTTTCAGGACATTCAACAAGCCTAT +TCT------------------GTTCTGTCCGACGCCAACAAGAGGTTTCTGTACGATGTA +GGAGCTTATGAAAGT------------------------GATGATGACGAAAATGGAATG +GGTGATTTTTTAAACGAGATGGCGGTGATGATGAGCCAGACTAAGCCGAATGAAAATGGA +------GGAGAGAGCTTCGAACAATTGCAG------------------GAGCTCTTTGAA +GAAATGTTTCAGGGGGATATT------GAGGGC--------------------------- +---TTTAGCTCCTGCTCTCAGCCT------------------------------------ +------------CCTACTTCCTGTTCTACTTCCTCATCTTCA------------------ +------------------------------------TACGCATTGTACTGTGAAAATTCT +ACT------------------------CCCAGTAACAAACGTAATTCCTCC---GCAATG +AATTATGGCAAC------GCAACCCTGGACAGTTCTGGTTTTGATGCTCATTTT------ +------------CACAATTTCTGTGTAGGG---ACA------------------------ +---------GGCGGGAAGCCAGCAAAGGATCGGGAAGGGGAT---GCCAGGAAGAGAAAG +GATTCCAGGAGGAGTAACCGG--------------------------------------- +------------------------------------------------------------ +>gnl_Mimgu1.0_PACid_17694730 +---------ATGGCTGCTGAT--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GAAGAGAAAAGC +AGCGATTTTTACGGCGTTCTGGGGCTGAGGAAAGAATGTACGGCGGCGGAGCTCAGGGTT +GCCTACAAGAAACTTGCAATGAAATGGCATCCAGATCGTTGCTCTGCTTCTGGG------ +---AATTTAAAGTATGTGGAGGAAGCAAAGAACAAGTTTCAAGCTGTCCAACAGGCCTAT +TCT------------------GTGCTTTCCGATGCCAACAAAAGGTTTCTCTACGACGTA +GGAATCTACGATTCTGAA------------------GACGATGCTGACGAAAACGGTATG +GGTGATTTCTTGAATGAAATGGTAGCAATGATGGGCCAAAGTAAACCAAATGAAAATAAA +------AACGAGAGCTTCCAAGAATTGCAA------------------GATCTATTCGAG +GAAATATTCAACAATGACGCG------GAAGAGGTT------------------------ +---TTCAAGATTCCTCCTCCGCAC------------------------------------ +------TTTCCGTACCAAGATTCTTGCAGCGAGACCCGCACC------------------ +------------------------------------------------------------ +---------------------------GCATCGAACAAGAGGAACGCCCGC---GAAATG +GGCTCCGTAAAT---------------TTCAGTAATATCGAAGCCACACCATTT------ +------------GAAGGGTTCTGCATAGGG---GAAAATGTAATTTTTGGGGGAGAGAGA +ATACAAACGAGGCCCGGA---------------------------GGAGGTAGTAGGAGG +ACG------AAGCCGAAGATTTCGACA---TCGATCGAT--------------------- +------------------------------------------------GGTTTAATTAGT +>gnl_Nelnu1.0_NNU_010544-RA +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +---ATGAACCTGTTGTTGCAGAAATGGCATCCGGATCGATGCTCCTCGTCGGGA------ +---AACTCTAAGTTCGTGGAAGATTCAAAGAAGAAATTTCAGGCAATTCAAGAGGCTTAT +TCT------------------GTTCTATCCGACGAGAATAAGCGATTTCTTTACGACGTT +GGAGTTTACGACTGCGACGAC---------------GATGACGATGACGAAAACGGAATG +GGAGAATTTTTGGGGGAAATGGCGACTATGATGAGCCAAATTAAACCCAGCGAGAACGGG +------CCGGAGAGTTTGGAGAAGCTGCAG------------------GAACTGTTCGAG +GAAATGTTCCAAAGGGACATG------GATGATGGT------------------------ +---TTCTTCTCCCCCTCCCCCCAATGCGCT------------------------------ +---------TCTTTTTCTTCGTCTTGCTCATCTTCTTCGTCG------------------ +---------------------------TCGACGACTTATTTTTCATATAATAACAACAAG +CAC---------------------------GACAATAAAAGGAATTGCTCC---GACATC +AGTTCTATGGAC------GATTTCTACACATTTGGCACGGATTCTATACAATTC------ +------------AGCAATTTCTGCATTGGG---GTGGAA------GGAGGAGAA---GAT +TCAAAAGTAAGAGGAGGAAAG---------------------------TCAAGGCGGAAG +AGCAACAGGAGACAAAAAGTTTCATCGTCTAAACACGATCCGTCGTGCCGT--------- +------------------------------------------------------------ +>gnl_Solly2.3_Solyc03g123560.2.1 +---------ATG------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------GAAGACAAAAGC +AATGATTATTATGCAGTTTTGGGGTTGAAGAAGGAATGCACTGACACAGAACTTAGGAAT +GCCTATAAGAAGCTTGCACTGAAATGGCACCCAGATCGCTGTTCAGCATCGGGG------ +---AATTTGAAGTTTGTAGATGAAGCAAAGAAGCAATTTCAGGCAATTCAAGAAGCATAT +TCT------------------GTGTTATCGGATGCAAACAAAAAGTTTTTGTACGATGTA +GGAGTTTATGACTCTGGT------------------GATGATGACGACGAAAATGGCATG +GGTGATTTCCTGAATGAAATGGCAGCTATGATGAGCCAAAATAAGTCCAATGAAAATCAG +---GGAGAAGAAACCTTTGAGGAATTGCAG------------------GATATGTTTAAT +GAAATGTTCAACAGTGATAAT------GGAACG--------------------------- +---TTTTCTTCTTCTTCTTCT--------------------------------------- +------------TCTTCTTCTTCTTGGACTGGAACTCCTTCA------------------ +------------------------------------ATGTGCTCTACTACATCATCTACA +TCTTCAAGTGAGACT---TTTTTAACCTTTCCCAACAAGAGAAGTTCAGGT---GAAATG +AAGTCGGGTAGT---------------AGTGTAAGAGGCGATTCTTGCCAATTC------ +------------CAAGGATTTTGTGTAGGG---GCA------------------------ +---------GGTGGAACTTCTGGAAAATGCAATGAAAGAGAA---CGAAGTTGGAGGAAA +AATTCCAAGAGTGGACGGAAGCAT------------------------------------ +------------------------------------------------------------ +>gnl_Sorbi1.4_PACid_1968370 +---------ATGGACGCCGGGGGA------------------------------------ +------------------------------------------------------------ +---------------GAGAAGTTCAGCGACGCGGCGGCGGCGGAGGGCGGTGAGGGCGGC +GGCGACCTCTACGCCGTCCTCGGGCTCAAGAAGGAGTGCTCCGACGCCGACCTCAAGGTC +GCTTACCGGAAGCTCGCCAAGAAATGGCACCCGGACAAATGCTCCTCCTCCAGC------ +---AGCGTGAAACACATGGAGGAAGCCAAGGAGAAGTTCCAAGAGATCCAGGGCGCCTAT +TCC------------------GTACTCTCTGACGCCAATAAACGGCTCCTCTACGATGTT +GGAGTATACGACGATGAGGAC---------------GACGAGGATAGCATGCAGGGGATG +GGTGACTTCATTGGTGAGATGGCCCAGATGATGAGCCAGGTGCGGCCGACGAGG------ +------CAGGAAAGCTTTGAGGAGCTGCAG------------------CAGCTTTTTGTG +GACATGTTCCAGTCTGATATT------GATTCAGGA------------------------ +---TTCTGCAACGGGTCTGCTAAG---GATCAAGTTCAGGGGCAAGCCAAAAGTAGAACA +TGCTCGACCTCACCTTCATCATCACCGTCCCCACCTCCTCCT------------------ +------------------------------CCTACTATAGTAAAGGAGGCAGAGGTGTCA +TCA------------------TGTAATGGCTTCAATAAGCGGGGTTCATCA---GCAATG +GACTCAGGGAAG---CCTCCAAGGCCT------GTTGAAGGCGGTGCTGGTCAG------ +------------GCTGGATTTTGTTTTGGG---GTGAGC------GATACGAAGCAAACG +CCGAAGCCGAGAGGTCCGAAC------------------------ACCAGCCGGAGGAGG +AACGGCCGGAAACAGAAGCTGTCATCC---AAGCACGATGTTTCATCTGAAGATGAAACG +GCCGGTTCC--------------------------------------------------- +>gnl_Thepa2.0_Tp3g12470 +---------ATGGCGTCGAACAAT------------------------------------ +------------------------------------------------------------ +---------------------------------------------AGCGAGAAAGGAAAC +GATGATTTGTATGGTGTTCTGGGCTTGAAGAAGGAATGTACGACGACGGAGCTCCGTACT +GCTTATAAGAAGCTTGCTCTAAGATGGCATCCAGATCGTTGTTCGTCAATGGGG------ +---ACTCCAGAGTTTGTAGACGAAGCAAAGAAGAAGTTTCAGGCAATCCAAGAGGCCTAT +TCT------------------GTTCTGTCTGACTCCAACAAGAGGTTCCTCTATGATGTT +GGAGCTTATAACAGT---------------------GATGATGAAGACCAAAACGGTATG +GGAGATTTCTTGAACGAAATGGCGGCAATGATGAATCAGTCCAAGCCTAGTGAGAATAAC +---TCAGGGGACAGTTTTGAGCAGCTACAA------------------GATCTGTTTAAT +GAGATGTTTCAAGGAGACGCT------GCAGCA--------------------------- +---TTCTCATCATCATCATCA--------------------------------------- +------------------TCATCTTGCTCTGCTTCGACTTTT------------------ +------------------------------------ACTTCCTCTTGTAGCTTTGTCTTT +GAC------------------------ACAAATAGTCAGCGGTCACCGTTT---GAGACA +AGCTCAATGGGG---------ACTAATGATCTTTTTGGATTCGATCACAGTGCT------ +------------CACACCTTCTCTTTAGGG---GTGGAA------CATCAGCAGGATTTC +AAGAAGGGGAAGAAC------------------------------AGTGGTGGAAGAAGA +AACAGAAGGAAGAACAATGCTCAATCGGCTGCTCACGAGACGGCGTCGTCCAACAACTAT +GGAGTCCCCACTTCA--------------------------------------------- +>gnl_Theca1.0_Tc06_g010450 +---------ATGGCAAATGGA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GAAGAGAAAAAC +AATGATTTTTATGCAGTTTTGGGGTTGAATAAAGAATGCACTCCGACAGAGCTCAGGACT +GCTTATAAGAAACTTGCCCTGAGATGGCACCCTGATCGTTGCTCAGCTTCGGGA------ +---AATTCAAAGTTCGTGGAAGAAGCCAAGAAGAAATTTCAGGCCATTCAACAAGCCTAT +TCT------------------GTTCTGTCTGACTCAAACAAGAGGTTTCTGTACGACGTA +GGAGCTTATGACAGT------------------------GATGATGACGAAAATGGAATG +GGAGATTTTTTGAACGAAATGGCAGGGATGATGAGCCAGACAAAATCTAATGAAAATGGA +------GGGGAAAGCTTCGAGGAACTACAG------------------GAATTGTTTGAA +GAAATGTTCCAAGCGGACATT------GATTCA--------------------------- +---TTTGAGTCTACTGGTCAG--------------------------------------- +------------TCCACTCCTTCCTGCTCTGCTTCATCTTCG------------------ +------------------------------------TTTGGGTCATATGGTGAAAGTTCC +AGC---------------------------TCCAACAAGCGGAATTCCTCT---GAAATG +AGTTCTGTGGAG---ACTAGGCTGGAGAGTTCTTCTAGCTTCGATGCACAATTT------ +------------CACAGTTTTTGTCTCGGG---GTGGAA------CACAGGCAAGATATC +AAGCAACACAGAGGAGCCAGAGGAGGAATGCGAGGAGCAGCCGGCGGTAGTAGACGGAGA +AATGGCAGGAAACAAAAGGTTTCATCT---GGCCATGATGTTACTTCCAACGAC---TGT +GGCATTTCTGCTTCA--------------------------------------------- +>gnl_Vitvi12X_PACid_17827068 +---------ATGGCCGCCGGA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GAAGAGAAGAGC +AATGATTTTTATGCCGTTCTAGGGTTGAAAAAGGAATGCACCGCCTCCGAGCTCAGAAAT +GCGTACAAGAGACTTGCCCTGATGTGGCACCCAGATCGTTGCTCCTCGTCGGGA------ +---AACTCGAAATTCGTGGAAGAAGCGAAGAAGAAATTTCAGGCCATACAAGAAGCCTAT +TCA------------------GTTCTCTCTGATGCGAATAAAAGGTTTCTGTACGACGTT +GGAGCCTACGACAGC------------------------GATGATGACGAAAACGGAATG +GGGGATTTTTTGAATGAGATGGCGGTTATGATGAGCCAAACCAAGTCCAATGAAAATGGG +------AAGGAGAGCTTTGAGGAGTTGCAG------------------GAGCTCTTTGAG +GATATGTTCCAAAGGGATGTC------GACGCA--------------------------- +---TTCAACTCTGCCTCTCATCAC------------------------------------ +------------CCCATGAACTCTTTCCCCAGTTCTACTTCC------------------ +------------------------------------ACTTCTTCCTACTGCGAAAGCTCC +AAT------------------------GCCAACAACAAGCGGAATTCGGCT---GAAATG +GGCTCTGGAAGGATGATGAGTGCAGGGGAGTCCTCTGCTTTTGATGCCCACTTT------ +------------CAGAGCTTCTGCTTTGGG---ACA------------------------ +---------GGCGGCACGCCAGGGAGATTTCAGGAGGGGGAA---AGGAGCAAGAGGAGG +AATTCCAGGAGGAGCCAACGG--------------------------------------- +------------------------------------------------------------ +>gnl_Selmo1.0_PACid_15401289 +---------ATG------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------GAGAAGAGGAAA +GAGGATCCCTACACTGTTCTTGGTGTCCAAAAGTCGAGTTCTAGCTCGGAAATTCGCTCC +GCTTATCGGAAGCTCGCCATGAAATGGCATCCAGATAAG--------------------- +---CAACACTCTTTAGAGGATCAAGCAAAAGCGAAGTTCCAGGGCATTCAAGAAGCTTAT +TCA------------------GTGCTATCCGACGACAAAAAAAGAGTTCTTTATGATTCG +GGACTTTATGACGAGGGA------------------GATGACGAG--------------- +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------GTGAGT--------------------- +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +>gnl_Orysa6.0_PACid_16864430 +---------ATGGCCCGCGGCGGCGGC--------------------------------- +------------------------------------------------------------ +------------GGC------------------------------GGCGGCGGCGCGGAC +GCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCAGGCTC +GCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGC +GCGAGCGCGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTAC +TCC------------------GTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTC +GGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATG +GGCGATTTCCTCGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCT------------ +------GCGGAGAGCTTCGAGGAGTTGCAG------------------CAGCTGTTCGTG +GACATGTTCCAGGACGACATC------GACGCCGGC------------------------ +---CTCTGCCAGTCGACGCCG--------------------------------------- +------------CCGCCGCCGTCATGGCCGTCGCCTCCGGCG------------------ +---------------------------------------GCCGCCAATGCACGATCGCCG +GCGGCGGCGGCGACT---TCACGCAAGGGCGTGAACAAGCGGTGCTCACCG---GCGGCG +ATGGACATGGAC---------------TCCGGTTTGAGCAGCCTGCTGGGCATT------ +------------TCGGGCTTCTGTTTCGAG---GCGCCA------TGGACGTCGCAGGAC +GCGAGCACTGCCGCCGGCGGTGGC---------------------GGCGGCAAGAGGAGA +AAGCAGAGGCCGCCGCCGGCG---------AGCCACAACGTG------------------ +------------------------------------------------------------ +>gnl_Sorbi1.4_PACid_1982925 +---------ATGGCTGCTACAAGTCAC--------------------------------- +------------------------------------------------------------ +------------TGCGGCAACATCCAGGACCAGGACGAAGAAGCTTCGGCTCCTGGCGCC +GCCGACCTCTACGCCGTGCTCGGGCTCAACAGGGAGTGCACCGACGCCGAGCTCAGGGTC +GCGTACCGGCGGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGCGTCCGGC------ +AGCTCGCCGGCGCGCATGGAGGAGGCCAAGGAGCGGTTCCAGGAGATCCAGGGCGCCTAC +TCC------------------GTGCTCTCCGACTCCAACAAGCGGCTCCTCTACGACGTC +GGCGTCTACGACAGCGACGAC---------------GACGAGGCTGACCTGTCGGGGATG +GGCGACTTCCTCGGAGAGATGGCCGACATGATGAGCCAGGCCACGCCA------------ +------ACGGAGACCTTCGAGGAGCTGCAG------------------CAGGTGTTCGTG +GACATGTTCCAGGACGACCTGGAC---GACGCCGGC------------------------ +---TTCTTCGGCGGGCTTCCGACG---ACGGGCCGCAGGGCCCAGGCA------CCCAGC +ACCTCGCTGCCGCCGTCGGTGTCGTCGTCGCCGTTGCGGCCG------------------ +------------------------------ACGCCTGCCGCTGGAAGAAGCAAGGGTCCG +CAAGCGACGCCGTCGTCGTCGTTTAAAGGCGTCGAGAGGCGGGGTTCGACG---TCGACG +GCGAAACGGCCGAGGCCCAACGGGTCGGCGGGCCTGGAATCGGACCTGGGCCTC------ +------------TCCGGATTCTGCTTCATG---GTGAGT------AAGGAGATGAGCAAG +TCGAAGGAGAGGCAAGCGGTA---------TGGGCCAGTGAC---GACGGTGACAGGAGC +ACCGATGGCAAGCAGAGGTTGTCGACG---AGCCGCGATGTCTCCGGTGGTGGG---ATG +TCACGCTCACTGCAGGGCCAAAGCAGCAAAAACTTGTTGCAGTGTATGGCCTCTAAGTCT +>gnl_Medtr3.5_Medtr8g022310.3 +---------ATGGCTAACGAA--------------------------------------- +------------------------------------------------------------ +------------------------------------------------GGAAACAAAAGC +AATGATTTCTATGCAGTTTTGGGATTGAATAAGGAATGCTCTGATTCAGAGCTAAGGAAT +GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGTTGTTCAGCTTCAGGG------ +---AATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTAT +TCT------------------GTTTTATCTGACTCGAACAAGAGATTAATGTACGACGTT +GGAGTTTACGACAGT------------------------GATGATGACGAAAATGTAAGG +CACTTGTTT--------------------------------------------------- +---------CACACCATTCATGAGTTGGGG------------------ACCCTCTTTTGC +GTTATGTTTTGTTTCTTCATTTCCTTGAGG------------------------------ +------GGAGAG------------------------------------------------ +---------------------------AAGAGAAGCAACCTT------------------ +------------------------------------AATTTAACCTTTTCACTTTCACAT +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +>gnl_Nelnu1.0_NNU_000115-RA +---------ATGGAGGTGGAC--------------------------------------- +------------------------------------------------------------ +---------------------------------------------TCCCATCGATCATCT +CCATCTTACTACACCATCCTTGGTGTAGATCAGAATTCCTCCGCTTCCGAGATACGCAAT +GCTTACAGGAAGCTCGCGATGCAATGGCATCCAGACAAATGGACGAAAACTCCG------ +---------TCGCTCTTAGAGAAAGCCAAGAGTAAATTCCAGCAAATCCAGGAGGCTTAT +TCGGGTGGGTTACTCGTTTTCATGTTATCGGATCAGGGGAAGAGAACACTGTATGATGTC +GGTCTGTATGACCCGGACGAT---------------GAAACGAATGACGAGGTGGGGCTT +CGCAGATTT------CATGCAGGAGATGATATCTCTCATGAACGATGT------------ +------GAAGAAACAGGAGAAGAAATACAGCTTGGAGGAACTACAGGAGATGTTAGTGGA +AATGTCACAAGGGCTGGAGTT------GAAGATGGAGAGTGCTGGTGGTGTGTGGTTGTT +AGATGGAGCTGCAGCCTCAAGGAG------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------GAGCTC +AAAGAGGGCCAG------------------------------------------------ +------------ATGGGAATCATCAGCGAG---TCCGAC------GACGCT--------- +------------------------------------------------------------ +------------------------------GGACACGACACACCTTCTCTCCCCCACTTG +CACGGTTCAGAGCTG---------------GAATTGTTAGGAAGAACCGGCTGTTGCAAT +>contig_7 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------GAGAATGAGTGGTCTGGG +GCTGAGTTTTTGAATGAAATGGCGGCAATGATGACTCAAAATAAATCCAATGAAAACGGA +------ACCGGAACTTTTGAAGAACTGCAA------------------CAATTGTTCGAT +GAAATGTTTCAGAGCGACATC------GAGTCC--------------------------- +---TTCAATGGTTGTTCTTCATCA------------------------------------ +------------TCCAATGAAACATGTAGC------------------------------ +------------------------------------------------------------ +---------------------------AACTCGAACAAGAGGAATTCCATT---GAGTCG +AGCTCGGCTAAT------------------------------------------------ +TTCAGACCCGAAAATGGAAACGAAAGCGGC------------------------------ +---------------------------------------GAG---ATTAGCGGGAAGAAG +AATACTAGGAAAGGTAAAGGTGACGNN--------------------------------- +------------------------------------------------------------